BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,090,347	Δ708 bp	coding (1‑708/708 nt)	endA →	DNA‑specific endonuclease I

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3090347	3091054	708	139 [0]	[0] 142	endA	DNA‑specific endonuclease I

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3090346	0 (0.000)	137 (0.920)	71/98	0.0	100%	intergenic (+94/‑1)	yggI/endA	conserved protein YggI/DNA‑specific endonuclease I
*	?	NC_000913	3091055 =	0 (0.000)	137 (0.920)	71/98	0.0	100%	intergenic (+1/‑79)	endA/rsmE	DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase

Only 100 of 142 total aligned reads displayed.

CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACC  >  NC_000913/3091006‑3091104

ccaaaacagctttcgctacgttgctggctcgttttaacacggagaagtgc                                                   >  1:370858‑M2/50‑50 (MQ=255)

  aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc                                                  >  1:3789538‑M2/48‑49 (MQ=255)

  aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCt                                                 <  1:531363‑M2/3‑1 (MQ=255)

   aaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa                                                <  2:12673‑M2/4‑1 (MQ=255)

   aaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa                                                >  2:3960345‑M2/47‑50 (MQ=255)

   aaacagctttcgctaagttgctggctcgttttaacacggagaagtgCCTa                                                <  2:3350892‑M2/4‑1 (MQ=255)

     acagctttcgctacgttgctggctcgttttaacacggagaagtgCCTaca                                              <  2:3278858‑M2/6‑1 (MQ=255)

     acagctttcgctacgttgctggctcgttttaacacggagaagtgCCTaca                                              <  1:3257777‑M2/6‑1 (MQ=255)

      cagctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac                                             <  1:1662815‑M2/7‑1 (MQ=255)

       agctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac                                             >  1:3180606‑M2/43‑49 (MQ=255)

         ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg                                          >  2:2315248‑M2/41‑50 (MQ=255)

         ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg                                          <  2:4060706‑M2/10‑1 (MQ=255)

          tttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc                                         >  1:3167911‑M2/40‑50 (MQ=255)

          tttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc                                         >  1:4716113‑M2/40‑50 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc                                         <  2:2200956‑M2/11‑1 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc                                         <  1:2319604‑M2/11‑1 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc                                         <  2:4831103‑M2/11‑1 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc                                         <  2:3665426‑M2/11‑1 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg                                       >  2:4260234‑M2/38‑50 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg                                       >  1:2592013‑M2/38‑50 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg                                       >  2:298834‑M2/38‑50 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCg                                        <  2:3478700‑M2/12‑1 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCg                                        <  1:3876284‑M2/12‑1 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCg                                        <  1:390149‑M2/12‑1 (MQ=255)

             cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg                                       >  1:3253595‑M2/37‑49 (MQ=255)

             cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg                                       >  1:4850330‑M2/37‑49 (MQ=255)

              gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCggg                                      <  1:233579‑M2/14‑1 (MQ=255)

              gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa                                     <  2:1876645‑M2/15‑1 (MQ=255)

              gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa                                     <  1:3568706‑M2/15‑1 (MQ=255)

              gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa                                     >  2:5321865‑M2/36‑50 (MQ=255)

              gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa                                     <  2:5622295‑M2/15‑1 (MQ=255)

               ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt                                    <  1:4440667‑M2/16‑1 (MQ=255)

               ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt                                    >  1:930610‑M2/35‑50 (MQ=255)

               ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt                                    <  1:1133272‑M2/16‑1 (MQ=255)

                tacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt                                   >  1:2258717‑M2/34‑50 (MQ=255)

                tacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt                                   >  2:2615873‑M2/34‑50 (MQ=255)

                tacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt                                   >  2:729318‑M2/34‑50 (MQ=255)

                 acgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc                                  >  2:1503590‑M2/33‑50 (MQ=255)

                  cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt                                   <  1:3052868‑M2/17‑1 (MQ=255)

                  cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt                                   <  2:3020698‑M2/17‑1 (MQ=255)

                  cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCt                                 <  2:910184‑M2/19‑1 (MQ=255)

                   gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt                                >  1:3140829‑M2/31‑50 (MQ=255)

                   gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt                                >  2:3837494‑M2/31‑50 (MQ=255)

                   gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt                                <  1:2176641‑M2/20‑1 (MQ=255)

                    ttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttt                               >  1:3271628‑M2/30‑50 (MQ=255)

                    ttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttt                               <  1:5258940‑M2/21‑1 (MQ=255)

                     tgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt                              >  1:312371‑M2/29‑50 (MQ=255)

                     tgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt                              >  2:4092235‑M2/29‑50 (MQ=255)

                      gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt                             >  1:4402134‑M2/28‑50 (MQ=255)

                      gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt                              <  2:3303210‑M2/22‑1 (MQ=255)

                      gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt                              <  2:3631872‑M2/22‑1 (MQ=255)

                       ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt                             <  2:4947243‑M2/23‑1 (MQ=255)

                       ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt                             <  1:1261576‑M2/23‑1 (MQ=255)

                       ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTg                            <  2:3630582‑M2/24‑1 (MQ=255)

                       ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTg                            >  1:5525720‑M2/27‑50 (MQ=255)

                        tggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt                           >  1:5699814‑M2/26‑50 (MQ=255)

                         ggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt                           >  1:1944834‑M2/25‑49 (MQ=255)

                         ggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt                           >  2:1561932‑M2/25‑49 (MQ=255)

                         ggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt                           >  2:1861735‑M2/25‑49 (MQ=255)

                          gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt                          >  2:5621517‑M2/24‑49 (MQ=255)

                          gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt                           <  1:4524333‑M2/25‑1 (MQ=255)

                          gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt                           <  2:1176794‑M2/25‑1 (MQ=255)

                          gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTa                         <  2:4081651‑M2/27‑1 (MQ=255)

                           ctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTaa                        >  2:1756404‑M2/23‑50 (MQ=255)

                           ctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTaa                        <  2:5226070‑M2/28‑1 (MQ=255)

                           ctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTaa                        <  1:3971591‑M2/28‑1 (MQ=255)

                            tcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAc                       >  1:2475205‑M2/22‑50 (MQ=255)

                              gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc                     >  2:1981881‑M2/20‑50 (MQ=255)

                              gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc                     >  1:789785‑M2/20‑50 (MQ=255)

                              gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc                     >  1:2921189‑M2/20‑50 (MQ=255)

                              gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcc                      <  1:1980227‑M2/30‑1 (MQ=255)

                               ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc                    >  2:5416047‑M2/19‑50 (MQ=255)

                               ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc                    <  2:5058760‑M2/32‑1 (MQ=255)

                               ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc                    >  1:976066‑M2/19‑50 (MQ=255)

                                tttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc                    >  1:5346742‑M2/18‑49 (MQ=255)

                                 ttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCt                   <  1:4314594‑M2/33‑1 (MQ=255)

                                 ttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa                  >  1:1866004‑M2/17‑50 (MQ=255)

                                 ttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa                  >  1:2849065‑M2/17‑50 (MQ=255)

                                   aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc                >  2:1442364‑M2/15‑50 (MQ=255)

                                   aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAc                 <  2:3333368‑M2/35‑1 (MQ=255)

                                    acacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAccc               >  2:5128307‑M2/14‑50 (MQ=255)

                                    acacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAccc               >  2:2806598‑M2/14‑50 (MQ=255)

                                    acacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAccc               >  1:2624399‑M2/14‑50 (MQ=255)

                                    acacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc                <  1:1592089‑M2/36‑1 (MQ=255)

                                     cacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAccc               >  1:4978906‑M2/13‑49 (MQ=255)

                                     cacggagaagtgACTACACTAGCGGGATTCTTTTTGTTAACCCCTAcccc              <  1:3028711‑M2/38‑1 (MQ=255)

                                      acggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCa             <  2:902642‑M2/39‑1 (MQ=255)

                                          agaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgcg         >  2:257080‑M2/8‑50 (MQ=255)

                                          agaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgcg         >  2:5617527‑M2/8‑50 (MQ=255)

                                            aagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTa       <  1:4703020‑M2/45‑1 (MQ=255)

                                            aagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTa       >  1:307211‑M2/6‑50 (MQ=255)

                                            aagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTa       <  1:5483558‑M2/45‑1 (MQ=255)

                                            aagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTa       >  2:3668231‑M2/6‑50 (MQ=255)

                                            aagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTa       >  2:1372914‑M2/6‑50 (MQ=255)

                                            aagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTa       >  1:4646720‑M2/6‑50 (MQ=255)

                                             agtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTa       >  2:701888‑M2/5‑49 (MQ=255)

                                                gCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAc   >  1:2200130‑M2/2‑50 (MQ=255)

                                                gCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAc   >  1:3455301‑M2/2‑50 (MQ=255)

                                                 ccTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAcc  <  2:4605255/50‑1 (MQ=255)

                                                 ccTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAc   <  1:690772/49‑1 (MQ=255)

CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACC  >  NC_000913/3091006‑3091104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`