Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 332,366 Δ44,951 bp pdeL–yaiL 39 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 332366 377316 44951 43 [0] [0] 43 pdeL–yaiL pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3323650 (0.000)42 (1.400) 36/98 0.0 100% intergenic (+489/‑6) yahV/pdeL protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL
?NC_000913 377317 = NA (NA)intergenic (+6/+218) yaiL/frmB DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB

AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/332318‑332365
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAG  >  NC_000913/377317‑377365
                                                                                                 
AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGA                                                 <  1:923021/50‑1
  TCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATA                                               <  1:1720005/50‑1
     ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGT                                            >  1:541902/1‑50
     ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGT                                            <  1:1418841/50‑1
        GGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGT                                         <  1:1280691/50‑1
         GTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTG                                        <  1:92714/50‑1
          TAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC                                       >  1:574457/1‑50
          TAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC                                       >  1:1825878/1‑50
           AATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                                      >  1:1546412/1‑50
            ATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                                      <  1:107003/49‑1
              CACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                                      >  1:2118131/1‑47
              CACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                                      >  1:1344357/1‑47
               ACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAG                                   <  1:2000237/49‑1
                   ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCC                              <  1:896881/50‑1
                   ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                               <  1:1982321/49‑1
                    TACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT                             <  1:1447124/50‑1
                    TACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT                             <  1:1824028/50‑1
                     ACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT                             >  1:1724471/1‑49
                      CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGA                           >  1:225853/1‑50
                      CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTG                            <  1:341239/49‑1
                       TGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT                          >  1:1126343/1‑50
                        GAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATG                         >  1:1450520/1‑50
                         AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC                        <  1:2093750/50‑1
                            AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGAC                     <  1:888606/50‑1
                             GCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACG                    <  1:225364/50‑1
                              CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC                   <  1:919390/50‑1
                              CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC                   <  1:2030101/50‑1
                               GATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCT                  <  1:2018201/50‑1
                               GATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC                   >  1:1471406/1‑49
                                 TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAT                <  1:1938267/50‑1
                                 TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAT                <  1:1648172/50‑1
                                  AAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATG               >  1:549339/1‑50
                                   AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGC              >  1:1757339/1‑50
                                     AGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGC            <  1:1828778/50‑1
                                       ATAAAGGTGGATAAGTCGTGCGCAGATGACTGATGCGACGCTATGCGCGT          <  1:1363584/50‑1
                                        TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTC         >  1:260204/1‑50
                                        TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTC         <  1:599209/50‑1
                                        TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTC         <  1:1711205/50‑1
                                          AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTT       <  1:1396097/50‑1
                                           AGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTA      <  1:1167145/50‑1
                                             GTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATC    <  1:1013884/50‑1
                                               GGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAG  >  1:418430/1‑50
                                                                                                 
AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/332318‑332365
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAG  >  NC_000913/377317‑377365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.