| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 43 [0] | [0] 43 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 42 (1.400) | 36/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377269‑377366 | aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa < 1:923021‑M2/2‑1 (MQ=255) tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGATa < 1:1720005‑M2/4‑1 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt > 1:541902‑M2/44‑50 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt < 1:1418841‑M2/7‑1 (MQ=255) ggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGt < 1:1280691‑M2/10‑1 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg < 1:92714‑M2/11‑1 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc > 1:1825878‑M2/39‑50 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc > 1:574457‑M2/39‑50 (MQ=255) aatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:1546412‑M2/38‑50 (MQ=255) atcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg < 1:107003‑M2/13‑1 (MQ=255) cactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:2118131‑M2/35‑47 (MQ=255) cactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:1344357‑M2/35‑47 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAg < 1:2000237‑M2/16‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGcc < 1:896881‑M2/21‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc < 1:1982321‑M2/20‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:1447124‑M2/22‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:1824028‑M2/22‑1 (MQ=255) actgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt > 1:1724471‑M2/28‑49 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTg < 1:341239‑M2/23‑1 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGa > 1:225853‑M2/27‑50 (MQ=255) tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:1126343‑M2/26‑50 (MQ=255) gaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg > 1:1450520‑M2/25‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:2093750‑M2/27‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc < 1:888606‑M2/30‑1 (MQ=255) gcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACg < 1:225364‑M2/31‑1 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc < 1:919390‑M2/32‑1 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc < 1:2030101‑M2/32‑1 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:1471406‑M2/18‑49 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCt < 1:2018201‑M2/33‑1 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 1:1938267‑M2/35‑1 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 1:1648172‑M2/35‑1 (MQ=255) aaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg > 1:549339‑M2/15‑50 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc > 1:1757339‑M2/14‑50 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc < 1:1828778‑M2/39‑1 (MQ=255) ataaaggtgGATAAGTCGTGCGCAGATGACTGATGCGACGCTATGCGCGt < 1:1363584‑M2/41‑1 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc > 1:260204‑M2/9‑50 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc < 1:599209‑M2/42‑1 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc < 1:1711205‑M2/42‑1 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCtt < 1:1396097‑M2/44‑1 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa < 1:1167145‑M2/45‑1 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATc < 1:1013884‑M2/47‑1 (MQ=255) gGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg > 1:418430‑M2/2‑50 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAgg > 1:959086/1‑50 (MQ=255) | CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377269‑377366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |