| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 43 [0] | [0] 43 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 42 (1.400) | 36/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
GAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC > NC_000913/332317‑332414 | gAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg > 1:77459/1‑49 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga < 1:923021‑M1/50‑3 (MQ=255) tCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgata < 1:1720005‑M1/50‑5 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt > 1:541902‑M1/1‑43 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt < 1:1418841‑M1/50‑8 (MQ=255) ggTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgt < 1:1280691‑M1/50‑11 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg < 1:92714‑M1/50‑12 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc > 1:574457‑M1/1‑38 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc > 1:1825878‑M1/1‑38 (MQ=255) aaTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:1546412‑M1/1‑37 (MQ=255) aTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg < 1:107003‑M1/49‑14 (MQ=255) cACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:1344357‑M1/1‑34 (MQ=255) cACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:2118131‑M1/1‑34 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcag < 1:2000237‑M1/49‑17 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcc < 1:896881‑M1/50‑22 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc < 1:1982321‑M1/49‑21 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct < 1:1447124‑M1/50‑23 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct < 1:1824028‑M1/50‑23 (MQ=255) aCTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct > 1:1724471‑M1/1‑27 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctga > 1:225853‑M1/1‑26 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg < 1:341239‑M1/49‑24 (MQ=255) tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 1:1126343‑M1/1‑25 (MQ=255) gAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg > 1:1450520‑M1/1‑24 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc < 1:2093750‑M1/50‑28 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:888606‑M1/50‑31 (MQ=255) gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg < 1:225364‑M1/50‑32 (MQ=255) cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc < 1:2030101‑M1/50‑33 (MQ=255) cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc < 1:919390‑M1/50‑33 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct < 1:2018201‑M1/50‑34 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:1471406‑M1/1‑17 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat < 1:1648172‑M1/50‑36 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat < 1:1938267‑M1/50‑36 (MQ=255) aaaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg > 1:549339‑M1/1‑14 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:1757339‑M1/1‑13 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc < 1:1828778‑M1/50‑40 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgactgatgcgacgctatgcgcgt < 1:1363584‑M1/50‑42 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc < 1:599209‑M1/50‑43 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc < 1:1711205‑M1/50‑43 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 1:260204‑M1/1‑8 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctt < 1:1396097‑M1/50‑45 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta < 1:1167145‑M1/50‑46 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatc < 1:1013884‑M1/50‑48 (MQ=255) ggataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatcag > 1:418430‑M1/1‑1 (MQ=255) | GAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC > NC_000913/332317‑332414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |