| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 22 (0.840) +CGAGAT |
18/86 | 0.2 | 54.5% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 42 (1.400) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380063‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTT > NC_000913/4070444‑4070476 |||||| AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC < 1:2053335/50‑1 AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACG < 1:336424/50‑1 AATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGA < 1:446502/50‑1 CAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG > 1:632363/1‑49 AGAATCTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGG < 1:1208150/49‑1 GAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGAC < 1:1261839/50‑1 GAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGAC > 1:2233346/1‑50 ATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGG > 1:913277/1‑50 ATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGG < 1:2227528/50‑1 TCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTC < 1:1261561/49‑1 CAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCC > 1:1664135/1‑50 CAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCC > 1:171193/1‑50 CAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCC > 1:940143/1‑50 CGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCct < 1:348486/50‑3 GGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTT < 1:1352855/50‑1 GGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTT < 1:81795/50‑1 GGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTG > 1:1398580/1‑50 GCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGG < 1:1025323/50‑1 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGG < 1:145944/48‑1 AAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGA > 1:1528390/1‑48 AGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAG < 1:1636427/50‑1 GTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGG < 1:462883/50‑1 GCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:1115953/1‑49 CAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTT < 1:636809/49‑1 CAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:2130177/1‑48 |||||| AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380063‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTT > NC_000913/4070444‑4070476 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |