| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 22 (0.840) +CGAGAT |
18/86 | 0.2 | 54.5% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 42 (1.400) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCC > NC_000913/380063‑380150 | aaGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc < 1:2053335‑M1/50‑2 (MQ=255) aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcg < 1:336424‑M1/50‑3 (MQ=255) aaTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgaga < 1:446502‑M1/50‑6 (MQ=255) cAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg > 1:632363‑M1/1‑42 (MQ=255) aGAATCTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgg < 1:1208150‑M1/49‑9 (MQ=255) gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggac < 1:1261839‑M1/50‑11 (MQ=255) gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggac > 1:2233346‑M1/1‑40 (MQ=255) aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacgg > 1:913277‑M1/1‑38 (MQ=255) aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacgg < 1:2227528‑M1/50‑13 (MQ=255) tCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtc < 1:1261561‑M1/49‑15 (MQ=255) cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccc > 1:1664135‑M1/1‑33 (MQ=255) cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccc > 1:171193‑M1/1‑33 (MQ=255) cAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcc > 1:940143‑M1/1‑28 (MQ=255) cGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccct < 1:348486‑M1/50‑27 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt < 1:1352855‑M1/50‑28 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt < 1:81795‑M1/50‑28 (MQ=255) ggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttg > 1:1398580‑M1/1‑22 (MQ=255) gCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgg < 1:1025323‑M1/50‑30 (MQ=255) cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggg < 1:145944‑M1/48‑32 (MQ=255) aaGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga > 1:1528390‑M1/1‑16 (MQ=255) aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag < 1:1636427‑M1/50‑36 (MQ=255) gTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagg < 1:462883‑M1/50‑37 (MQ=255) gCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt > 1:1115953‑M1/1‑11 (MQ=255) cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggtt < 1:636809‑M1/49‑40 (MQ=255) cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt > 1:2130177‑M1/1‑10 (MQ=255) | AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCC > NC_000913/380063‑380150 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |