| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 22 (0.840) +CGAGAT |
18/86 | 0.2 | 54.5% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 42 (1.400) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
CGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACC > NC_000913/4070396‑4070493 | cagaatttccaggtcagacgggctgcaagttgcagaccgttacgagatg > 1:632363‑M2/49‑49 (MQ=255) gACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGa > 1:2039731/1‑50 (MQ=255) gACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGa < 1:2132775/50‑1 (MQ=255) gACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGa < 1:336539/50‑1 (MQ=255) agaatctccaggtcagacgggctgcaagttgcagaccgttacgagatgg < 1:1208150‑M2/2‑1 (MQ=255) gaatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGAc > 1:2233346‑M2/47‑50 (MQ=255) gaatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGAc < 1:1261839‑M2/4‑1 (MQ=255) aCATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc > 1:2170482/1‑50 (MQ=255) atttccaggtcagacgggctgcaagttgcagaccgttacgagatGGACgg < 1:2227528‑M2/6‑1 (MQ=255) atttccaggtcagacgggctgcaagttgcagaccgttacgagatGGACgg > 1:913277‑M2/45‑50 (MQ=255) aTACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACgg > 1:649612/1‑50 (MQ=255) aTACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACgg > 1:115830/1‑50 (MQ=255) aTACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACgg > 1:2195535/1‑50 (MQ=255) tccaggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTc < 1:1261561‑M2/8‑1 (MQ=255) aGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTccc < 1:785320/50‑1 (MQ=255) caggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTcccc > 1:1664135‑M2/40‑50 (MQ=255) caggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTcccc > 1:171193‑M2/40‑50 (MQ=255) cTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc < 1:2026163/50‑1 (MQ=255) cTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc < 1:1780708/50‑1 (MQ=255) cTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc > 1:45990/1‑50 (MQ=255) cccGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGc > 1:540621/1‑50 (MQ=255) ccGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGcc > 1:1671507/1‑50 (MQ=255) ccGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGcc > 1:2056401/1‑50 (MQ=255) cagacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGcc > 1:940143‑M2/35‑50 (MQ=255) gTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGcccc > 1:1289718/1‑50 (MQ=255) gAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCtt > 1:1542962/1‑50 (MQ=255) cgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTcgccccct < 1:348486‑M2/20‑3 (MQ=255) gggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCctt < 1:81795‑M2/21‑1 (MQ=255) gggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCctt < 1:1352855‑M2/21‑1 (MQ=255) aGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCttt > 1:124924/1‑50 (MQ=255) aGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCtt < 1:16434/49‑1 (MQ=255) ggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTg > 1:1398580‑M2/29‑50 (MQ=255) gctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTgg < 1:1025323‑M2/23‑1 (MQ=255) tGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:1804110/1‑49 (MQ=255) gATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:1959212/1‑48 (MQ=255) gATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:306879/1‑48 (MQ=255) caagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTgggg < 1:145944‑M2/25‑1 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:1111183/1‑47 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:951111/1‑47 (MQ=255) aagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGga > 1:1528390‑M2/23‑48 (MQ=255) agttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGagag < 1:1636427‑M2/29‑1 (MQ=255) gttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAgg < 1:462883‑M2/30‑1 (MQ=255) aaaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGt > 1:1373806/1‑50 (MQ=255) gcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGt > 1:1115953‑M2/18‑49 (MQ=255) aaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGtt < 1:318898/50‑1 (MQ=255) aaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGt > 1:158113/1‑49 (MQ=255) aaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGt > 1:1683566/1‑49 (MQ=255) cagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGtt < 1:636809‑M2/33‑1 (MQ=255) cagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGt > 1:2130177‑M2/17‑48 (MQ=255) ccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg < 1:92094/50‑1 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAggg < 1:530260/50‑1 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAggg < 1:604543/50‑1 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAggg < 1:1721008/50‑1 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg > 1:1368552/1‑49 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg > 1:413833/1‑49 (MQ=255) aaaaaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg > 1:950213/1‑48 (MQ=255) aaaaaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg > 1:1028823/1‑48 (MQ=255) aaaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGgaga < 1:1181569/50‑1 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgg > 1:1163452/1‑50 (MQ=255) cACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaa < 1:1855386/50‑1 (MQ=255) cACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGa > 1:1392417/1‑49 (MQ=255) ccGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaaa < 1:819394/50‑1 (MQ=255) cGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAc > 1:2179333/1‑50 (MQ=255) cGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAc < 1:96078/50‑1 (MQ=255) ggACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAcc > 1:1556195/1‑50 (MQ=255) | CGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACC > NC_000913/4070396‑4070493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |