| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 687,860 | Δ1,185 bp | IS5‑mediated | insH‑3 | insH‑3 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 687860 | 689044 | 1185 | 38 [0] | [0] 38 | insH‑3 | insH‑3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 687859 | 0 (0.000) | 38 (1.290) | 31/96 | 0.0 | 100% | noncoding (1187/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 689045 = | 0 (0.000) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687811‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTT > NC_000913/689045‑689090 TATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCC > 1:1546159/1‑50 TCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCT < 1:699124/49‑1 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG < 1:1131303/50‑1 CTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGG > 1:11915/1‑49 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAA > 1:1770656/1‑49 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGT < 1:1221859/47‑1 ACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACAT < 1:2168824/50‑1 ACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACAT < 1:1501056/50‑1 CTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCC‑TAGGTAACCTT > 1:1824332/1‑49 TTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT > 1:926522/1‑48 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTA < 1:1397482/49‑1 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTT < 1:860305/48‑1 TTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGT < 1:1762598/49‑1 GTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTG > 1:104499/1‑50 TGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGG < 1:692986/50‑1 GCAGTGTTGTGCCTGTTAGGGAAGGCGCCTTAGGTAACATTTAGTTTGGC > 1:68084/1‑50 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCT < 1:889114/50‑1 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGC < 1:1439629/49‑1 AGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCT > 1:980795/1‑49 GTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGT < 1:1979179/49‑1 GTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGT < 1:2069434/49‑1 TGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA < 1:46308/49‑1 CCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAA < 1:2123354/49‑1 CCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAA < 1:2191864/49‑1 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAT < 1:2150809/50‑1 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAT < 1:962199/50‑1 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATA < 1:2177827/49‑1 TAGGGAAGGTGCTTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT > 1:40352/1‑50 AGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTG > 1:2115762/1‑50 AGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT < 1:1933295/49‑1 AGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT < 1:1585435/49‑1 GGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCT > 1:1574391/1‑50 AAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTG < 1:1455538/49‑1 AGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTT < 1:835194/50‑1 AGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTT < 1:131882/50‑1 AGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTT < 1:1105126/50‑1 GGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTT < 1:1254559/50‑1 GTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTT < 1:1947255/50‑1 TATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687811‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTT > NC_000913/689045‑689090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |