| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 687,860 | Δ1,185 bp | IS5‑mediated | insH‑3 | insH‑3 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 687860 | 689044 | 1185 | 38 [0] | [0] 38 | insH‑3 | insH‑3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 687859 | 0 (0.000) | 38 (1.290) | 31/96 | 0.0 | 100% | noncoding (1187/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 689045 = | 0 (0.000) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTC > NC_000913/687811‑687905 | tATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCc > 1:1546159‑M1/1‑49 (MQ=255) tCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCct < 1:699124‑M1/49‑3 (MQ=255) gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag < 1:1131303‑M1/50‑6 (MQ=255) cTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttagg > 1:11915‑M1/1‑43 (MQ=255) cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa > 1:1770656‑M1/1‑40 (MQ=255) cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggt < 1:1221859‑M1/47‑8 (MQ=255) aCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacat < 1:2168824‑M1/50‑13 (MQ=255) aCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacat < 1:1501056‑M1/50‑13 (MQ=255) cTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCctaggtaacctt > 1:1824332‑M1/1‑37 (MQ=255) ttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt > 1:926522‑M1/1‑35 (MQ=255) tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattta < 1:1397482‑M1/49‑16 (MQ=255) tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattt < 1:860305‑M1/48‑15 (MQ=255) ttGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagt < 1:1762598‑M1/49‑18 (MQ=255) gtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttg > 1:104499‑M1/1‑30 (MQ=255) tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttgg < 1:692986‑M1/50‑22 (MQ=255) gCAGTGTTGTGCCTGTTAGGGAAGGCGCcttaggtaacatttagtttggc > 1:68084‑M1/1‑28 (MQ=255) cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct < 1:889114‑M1/50‑24 (MQ=255) cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc < 1:1439629‑M1/49‑23 (MQ=255) aGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct > 1:980795‑M1/1‑26 (MQ=255) gtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgt < 1:1979179‑M1/49‑30 (MQ=255) gtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgt < 1:2069434‑M1/49‑30 (MQ=255) tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta < 1:46308‑M1/49‑31 (MQ=255) ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaa < 1:2123354‑M1/49‑33 (MQ=255) ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaa < 1:2191864‑M1/49‑33 (MQ=255) ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat < 1:2150809‑M1/50‑38 (MQ=255) ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat < 1:962199‑M1/50‑38 (MQ=255) ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagata < 1:2177827‑M1/49‑37 (MQ=255) tAGGGAAGGTGCtttaggtaacatttagtttggctaaatgtaaagatatt > 1:40352‑M1/1‑12 (MQ=255) aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg > 1:2115762‑M1/1‑11 (MQ=255) aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt < 1:1933295‑M1/49‑39 (MQ=255) aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt < 1:1585435‑M1/49‑39 (MQ=255) ggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgct > 1:1574391‑M1/1‑9 (MQ=255) aaGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg < 1:1455538‑M1/49‑43 (MQ=255) aGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtt < 1:835194‑M1/50‑45 (MQ=255) aGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtt < 1:131882‑M1/50‑45 (MQ=255) aGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtt < 1:1105126‑M1/50‑45 (MQ=255) ggTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt < 1:1254559‑M1/50‑46 (MQ=255) gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttt < 1:1947255‑M1/50‑47 (MQ=255) | TATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTC > NC_000913/687811‑687905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |