| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 26 [0] | [0] 26 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 25 (0.850) | 23/96 | 0.1 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320095‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:1030964/1‑50 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:122991/50‑1 TGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCA < 1:502499/50‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 1:927711/50‑1 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT > 1:1241145/1‑50 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT < 1:898545/50‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:1410805/1‑50 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:1044494/1‑49 CATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT > 1:1238198/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT < 1:350851/50‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT > 1:1937373/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT < 1:1832855/49‑1 GTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCT > 1:1336708/1‑50 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:773619/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:1910261/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:873405/50‑1 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:1487532/1‑49 TATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:1511780/1‑50 TATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:841343/1‑50 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA < 1:931153/50‑1 TGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAT > 1:1750810/1‑50 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT > 1:1950463/1‑50 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT < 1:1341727/50‑1 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:975877/1‑49 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTT < 1:1119916/49‑1 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > 1:1789034/1‑50 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320095‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |