| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 26 [0] | [0] 26 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 25 (0.850) | 23/96 | 0.1 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336584‑2336681 | tgatggcaatcctgatggtcattgtcccaacgcttactattggttatatt > 1:1030964‑M2/50‑50 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatatTTc < 1:122991‑M2/3‑1 (MQ=255) tggcaatcctgatggtcattgtcccaacgcttactattggttatatTTca < 1:502499‑M2/4‑1 (MQ=255) caatcctgatggtcattgtcccaacgcttactattggttatatTTcacca < 1:927711‑M2/7‑1 (MQ=255) atcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt > 1:1241145‑M2/42‑50 (MQ=255) atcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt < 1:898545‑M2/9‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc > 1:1410805‑M2/36‑50 (MQ=255) tggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc > 1:1044494‑M2/35‑49 (MQ=255) cattgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAt > 1:1238198‑M2/31‑50 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt < 1:350851‑M2/21‑1 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt > 1:1937373‑M2/30‑50 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAt < 1:1832855‑M2/20‑1 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCt > 1:1336708‑M2/27‑50 (MQ=255) aacgcttactattggttatatTTCACCACTCATTGCCACATTCCTTgtgt < 1:773619‑M2/29‑1 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtata < 1:1910261‑M2/32‑1 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtata < 1:873405‑M2/32‑1 (MQ=255) tactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:1487532‑M2/16‑49 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:1511780‑M2/13‑50 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:841343‑M2/13‑50 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAgccagcca < 1:931153‑M2/40‑1 (MQ=255) tggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAt > 1:1750810‑M2/10‑50 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt > 1:1950463‑M2/7‑50 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt < 1:1341727‑M2/44‑1 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt > 1:975877‑M2/5‑49 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttttt < 1:1119916‑M2/46‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACg > 1:1789034‑M2/2‑50 (MQ=255) | TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336584‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |