| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 20 [0] | [0] 19 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 19 (0.680) | 16/92 | 0.4 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846250‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > NC_000913/2867269‑2867310 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:1095967/1‑49AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:1130698/1‑49AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC < 1:749474/49‑1 ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:2209354/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:1278037/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:1317757/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:1005545/1‑50 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 1:632310/1‑50 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:815691/1‑48 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG > 1:1810234/1‑50 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG > 1:1585923/1‑50 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCG < 1:1923353/50‑1 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA > 1:22890/1‑50 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGAC < 1:2058389/49‑1 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:2098378/1‑50 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:1354803/1‑50 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGC < 1:1450462/50‑1 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCA < 1:2077518/50‑1 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC < 1:1806429/50‑1 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC > 1:442951/1‑50 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA > 1:141032/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 1:608935/50‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 1:867091/50‑1 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846250‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > NC_000913/2867269‑2867310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |