| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 20 [0] | [0] 19 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 19 (0.680) | 16/92 | 0.4 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTC > NC_000913/2846251‑2846342 | aCGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:2209354‑M1/1‑50 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:1278037‑M1/1‑45 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:1317757‑M1/1‑45 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:1005545‑M1/1‑45 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggc > 1:632310‑M1/1‑41 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:815691‑M1/1‑36 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:1810234‑M1/1‑33 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagagg > 1:1585923‑M1/1‑32 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcg < 1:1923353‑M1/50‑21 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgaca > 1:22890‑M1/1‑27 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgac < 1:2058389‑M1/49‑23 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:2098378‑M1/1‑25 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:1354803‑M1/1‑19 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgc < 1:1450462‑M1/50‑33 (MQ=255) ttACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgca < 1:2077518‑M1/50‑34 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc < 1:1806429‑M1/50‑38 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc > 1:442951‑M1/1‑13 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga > 1:141032‑M1/1‑9 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 1:608935‑M1/50‑43 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 1:867091‑M1/50‑43 (MQ=255) | ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTC > NC_000913/2846251‑2846342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |