| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 20 [0] | [0] 19 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 19 (0.680) | 16/92 | 0.4 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
CATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > NC_000913/2867224‑2867310 | gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:1278037‑M2/46‑50 (MQ=255)gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:1317757‑M2/46‑50 (MQ=255)gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:1005545‑M2/46‑50 (MQ=255) tgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggc > 1:632310‑M2/42‑50 (MQ=255) attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:815691‑M2/37‑48 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag > 1:1810234‑M2/34‑50 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAgg > 1:1585923‑M2/33‑50 (MQ=255) tttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCg < 1:1923353‑M2/20‑1 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGAc < 1:2058389‑M2/22‑1 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa > 1:22890‑M2/28‑50 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 1:2098378‑M2/26‑50 (MQ=255) cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:1354803‑M2/20‑50 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGc < 1:1450462‑M2/32‑1 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCa < 1:2077518‑M2/33‑1 (MQ=255) caaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc < 1:1806429‑M2/37‑1 (MQ=255) caaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc > 1:442951‑M2/14‑50 (MQ=255) cagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGa > 1:141032‑M2/10‑50 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc < 1:608935‑M2/42‑1 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc < 1:867091‑M2/42‑1 (MQ=255) | CATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > NC_000913/2867224‑2867310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |