| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 28 [0] | [0] 28 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 27 (0.920) | 23/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618943‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625680‑3625728 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTT < 1:1150076/50‑1GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTT < 1:1877054/50‑1 CGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:1462609/1‑50 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCC < 1:601878/50‑1 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA > 1:1210379/1‑50 GCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGT < 1:1816175/50‑1 ACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC < 1:2200500/50‑1 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC > 1:1947790/1‑49 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:1440415/50‑1 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 1:304420/1‑50 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 1:1509537/1‑50 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCT < 1:189284/49‑1 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC > 1:841355/1‑50 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:940247/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:1962732/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC < 1:661633/49‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA < 1:1437606/50‑1 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:1232369/1‑50 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGC < 1:1782049/50‑1 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGC < 1:1063158/50‑1 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:23333/1‑49 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT < 1:1148258/50‑1 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT < 1:908478/50‑1 TGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATG > 1:1061099/1‑50 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT < 1:547524/50‑1 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > 1:1133965/1‑50 GTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG < 1:926918/50‑1 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA < 1:1731731/50‑1 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618943‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625680‑3625728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |