| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 28 [0] | [0] 28 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 27 (0.920) | 23/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
TTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625631‑3625728 | gcggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtt < 1:1150076‑M2/1‑1 (MQ=255)gcggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtt < 1:1877054‑M2/1‑1 (MQ=255) cgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc > 1:1462609‑M2/46‑50 (MQ=255) gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGcc < 1:601878‑M2/6‑1 (MQ=255) tgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCa > 1:1210379‑M2/44‑50 (MQ=255) gcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGt < 1:1816175‑M2/11‑1 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc < 1:2200500‑M2/13‑1 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTccc > 1:1947790‑M2/36‑49 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc < 1:1440415‑M2/18‑1 (MQ=255) atttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCg > 1:304420‑M2/32‑50 (MQ=255) atttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCg > 1:1509537‑M2/32‑50 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCt < 1:189284‑M2/22‑1 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTcc > 1:841355‑M2/26‑50 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGaa > 1:940247‑M2/22‑50 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:661633‑M2/31‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:1962732‑M2/19‑50 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:1437606‑M2/34‑1 (MQ=255) gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:1232369‑M2/16‑50 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc < 1:1782049‑M2/36‑1 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc < 1:1063158‑M2/36‑1 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:23333‑M2/15‑49 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:1148258‑M2/44‑1 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:908478‑M2/44‑1 (MQ=255) tgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:1061099‑M2/6‑50 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt < 1:547524‑M2/47‑1 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt > 1:1133965‑M2/4‑50 (MQ=255) gtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTg < 1:926918‑M2/48‑1 (MQ=255) tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGa < 1:1731731‑M2/49‑1 (MQ=255) | TTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625631‑3625728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |