| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 28 [0] | [0] 28 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 27 (0.920) | 23/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACAC > NC_000913/3618943‑3619040 | gcggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTt < 1:1150076‑M1/50‑2 (MQ=255)gcggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTt < 1:1877054‑M1/50‑2 (MQ=255) cgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgc > 1:1462609‑M1/1‑45 (MQ=255) gTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgcc < 1:601878‑M1/50‑7 (MQ=255) tGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgcca > 1:1210379‑M1/1‑43 (MQ=255) gCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgt < 1:1816175‑M1/50‑12 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc < 1:2200500‑M1/50‑14 (MQ=255) gggCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtccc > 1:1947790‑M1/1‑35 (MQ=255) cATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatc < 1:1440415‑M1/50‑19 (MQ=255) aTTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcg > 1:304420‑M1/1‑31 (MQ=255) aTTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcg > 1:1509537‑M1/1‑31 (MQ=255) gCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtct < 1:189284‑M1/49‑23 (MQ=255) aGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcc > 1:841355‑M1/1‑25 (MQ=255) cTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaa > 1:940247‑M1/1‑21 (MQ=255) gCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg > 1:1962732‑M1/1‑18 (MQ=255) gCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatc < 1:661633‑M1/49‑32 (MQ=255) cGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcgca < 1:1437606‑M1/50‑35 (MQ=255) gaaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:1232369‑M1/1‑15 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagc < 1:1782049‑M1/50‑37 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagc < 1:1063158‑M1/50‑37 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:23333‑M1/1‑14 (MQ=255) ttGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaat < 1:1148258‑M1/50‑45 (MQ=255) ttGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaat < 1:908478‑M1/50‑45 (MQ=255) tGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg > 1:1061099‑M1/1‑5 (MQ=255) aGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggt < 1:547524‑M1/50‑48 (MQ=255) aGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggt > 1:1133965‑M1/1‑3 (MQ=255) gTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg < 1:926918‑M1/50‑49 (MQ=255) ttacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtga < 1:1731731‑M1/50‑50 (MQ=255) | GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACAC > NC_000913/3618943‑3619040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |