BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,555,491	Δ41,523 bp		[yjiC]–lgoD	37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4555491	4597013	41523	34 [0]	[0] 33	[yjiC]–lgoD	[yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4555490	0 (0.000)	31 (1.060)	26/96	0.0	100%	coding (831/831 nt)	yjiC	uncharacterized protein YjiC
*	?	NC_000913	4597014 =	0 (0.000)	31 (1.060)	26/96	0.0	100%	intergenic (+2/+136)	lgoD/opgB	L‑galactonate oxidoreductase/phosphoglycerol transferase I

TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555442‑4555490

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  NC_000913/4597014‑4597062

TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTA                                                  <  1:1285326/50‑1

TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   <  1:2229774/49‑1

     CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:1261282/1‑49

          TGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                         >  1:2035560/1‑49

            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT                                      >  1:750454/1‑50

            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT                                      >  1:291748/1‑50

            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA                                       <  1:984962/49‑1

            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                         <  1:1028474/47‑1

              TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT                                     <  1:226440/49‑1

                 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG                                 <  1:657650/50‑1

                  CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT                                <  1:398327/50‑1

                   TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                               >  1:1921462/1‑50

                     AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC                             >  1:723326/1‑50

                     AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC                             >  1:1278019/1‑50

                     AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG                              <  1:841406/49‑1

                      ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC                             >  1:1972760/1‑49

                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                         >  1:2033095/1‑50

                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT                          <  1:1630561/49‑1

                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT                          <  1:940057/49‑1

                            GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG                      <  1:321554/50‑1

                            GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA                       <  1:1468067/49‑1

                               CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT                   >  1:1281035/1‑50

                                TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC                  >  1:1630957/1‑50

                                  ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC                 <  1:1850667/49‑1

                                   TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG               >  1:1082802/1‑50

                                      TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG             >  1:902518/1‑49

                                        CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAA           <  1:1972730/49‑1

                                            GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT      <  1:1943192/50‑1

                                            GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT      >  1:735533/1‑50

                                            GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT      <  1:1611936/50‑1

                                            GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT       <  1:428435/49‑1

                                               GTAAGGCGAGATTATTAAAGTTGCCATGCAGGGTCCGGGGAAGTGTTGcg   >  1:1210396/1‑48

                                                TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  1:1155278/1‑50

                                                TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  <  1:2071333/50‑1

TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555442‑4555490

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  NC_000913/4597014‑4597062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.