| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 34 [0] | [0] 33 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 31 (1.060) | 26/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 | tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTa < 1:1285326‑M1/50‑2 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:2229774‑M1/49‑1 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:1261282‑M1/1‑44 (MQ=255) tGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat > 1:2035560‑M1/1‑39 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat > 1:750454‑M1/1‑37 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat > 1:291748‑M1/1‑37 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta < 1:984962‑M1/49‑13 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat < 1:1028474‑M1/47‑11 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatt < 1:226440‑M1/49‑15 (MQ=255) ccTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaag < 1:657650‑M1/50‑19 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt < 1:398327‑M1/50‑20 (MQ=255) tGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt > 1:1921462‑M1/1‑30 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:723326‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:1278019‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg < 1:841406‑M1/49‑22 (MQ=255) aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:1972760‑M1/1‑27 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg > 1:2033095‑M1/1‑24 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat < 1:1630561‑M1/49‑26 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat < 1:940057‑M1/49‑26 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcag < 1:321554‑M1/50‑30 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:1468067‑M1/49‑29 (MQ=255) cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgt > 1:1281035‑M1/1‑18 (MQ=255) tCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc > 1:1630957‑M1/1‑17 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc < 1:1850667‑M1/49‑35 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg > 1:1082802‑M1/1‑14 (MQ=255) ttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg > 1:902518‑M1/1‑11 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaa < 1:1972730‑M1/49‑41 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt < 1:1943192‑M1/50‑46 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt > 1:735533‑M1/1‑5 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt < 1:1611936‑M1/50‑46 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgt < 1:428435‑M1/49‑45 (MQ=255) gtaaggcgagattattaaagttgccatgcagggtccggggaagtgttgcg > 1:1210396‑M1/1‑2 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc > 1:1155278‑M1/1‑1 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 1:2071333‑M1/50‑50 (MQ=255) | TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |