Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 34 [0] | [0] 33 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 4555490 | 0 (0.000) | 31 (1.060) | 26/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I |
GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4596965‑4597062 | tttagctatctgtataacctgaatgttagtactcattcttcctggtagta < 1:1285326‑M2/1‑1 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:1261282‑M2/45‑49 (MQ=255) tgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat > 1:2035560‑M2/40‑49 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:750454‑M2/38‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:291748‑M2/38‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta < 1:984962‑M2/12‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat < 1:1028474‑M2/10‑1 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGattatt < 1:226440‑M2/14‑1 (MQ=255) cctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAg < 1:657650‑M2/18‑1 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt < 1:398327‑M2/19‑1 (MQ=255) tgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt > 1:1921462‑M2/31‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg < 1:841406‑M2/21‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:1278019‑M2/29‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:723326‑M2/29‑50 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:1972760‑M2/28‑49 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 1:940057‑M2/25‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 1:1630561‑M2/25‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:2033095‑M2/25‑50 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:1468067‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAg < 1:321554‑M2/29‑1 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt > 1:1281035‑M2/19‑50 (MQ=255) tcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc > 1:1630957‑M2/18‑50 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 1:1850667‑M2/34‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg > 1:1082802‑M2/15‑50 (MQ=255) ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:902518‑M2/12‑49 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGaa < 1:1972730‑M2/40‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt < 1:428435‑M2/44‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt > 1:735533‑M2/6‑50 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:1611936‑M2/45‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:1943192‑M2/45‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGGGTCCGGGGAAGTGttgcg > 1:1210396‑M2/3‑48 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc > 1:1155278‑M2/2‑50 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:2071333‑M2/49‑1 (MQ=255) | GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4596965‑4597062 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |