| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 35 (1.070) +CGAGAT |
20/86 | 0.2 | 69.0% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 36 (0.960) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
GGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380065‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGA > NC_000913/4070444‑4070481 |||||| GGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:1106805/1‑48 GAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAG < 1:1426267/50‑1 TCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG < 1:2431160/50‑1 TCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG < 1:1728895/50‑1 AGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGG < 1:1756896/49‑1 GAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGAC < 1:2313026/50‑1 AATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACG > 1:914173/1‑50 AATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACG > 1:334042/1‑50 AATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACG < 1:1030856/50‑1 AATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACG < 1:1655749/50‑1 TTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGT < 1:2083007/50‑1 TCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCC > 1:1965446/1‑50 TCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCC > 1:2517627/1‑50 CCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCC > 1:2665731/1‑50 CCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCC > 1:760965/1‑50 CAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCC < 1:1139357/49‑1 AGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT < 1:1651762/50‑1 AGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT > 1:1772552/1‑50 GGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTC > 1:1429710/1‑50 GTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCG > 1:1805783/1‑50 AGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCC > 1:2169048/1‑50 AGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCC > 1:1219794/1‑50 CGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCct < 1:1309526/50‑3 CGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCct > 1:365417/1‑48 CGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCct > 1:1102969/1‑48 GGGCTGCAAGTTGCAGACCGTTACGAGCTGGACGGTCCCCTCGCCCCCTT > 1:1717677/1‑50 GGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTT > 1:2588659/1‑50 GCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGG < 1:2723901/50‑1 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGA < 1:1595326/49‑1 GTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGG > 1:2232897/1‑50 TGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:2435449/1‑50 TGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:2426103/1‑50 GCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:2663696/1‑49 CCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGTGATTGGGTTAGGGt > 1:2495778/1‑49 CCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGt < 1:1960815/50‑2 CGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGt > 1:329954/1‑48 CGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGt > 1:1063670/1‑48 |||||| GGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380065‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGA > NC_000913/4070444‑4070481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |