New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 380111	0 (0.000)	35 (1.070) +CGAGAT	20/86	0.2	69.0%	coding (732/774 nt)	yaiO	outer membrane protein YaiO
	?	NC_000913	4070444 =	36 (0.960)					intergenic (‑43/+71)	yihR/yihS	putative aldose 1‑epimerase YihR/sulfoquinovose isomerase

GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAG  >  NC_000913/380062‑380155                                                  |                                             gAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTa                                              <  1:1319078/50‑1 (MQ=255)    ggAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                             >  1:1106805‑M1/1‑47 (MQ=255)     gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgag                                          <  1:1426267‑M1/50‑5 (MQ=255)        tCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg                                       <  1:2431160‑M1/50‑8 (MQ=255)        tCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg                                       <  1:1728895‑M1/50‑8 (MQ=255)          aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgg                                      <  1:1756896‑M1/49‑9 (MQ=255)           gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggac                                    <  1:2313026‑M1/50‑11 (MQ=255)            aaTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacg                                   >  1:914173‑M1/1‑39 (MQ=255)            aaTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacg                                   >  1:334042‑M1/1‑39 (MQ=255)            aaTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacg                                   <  1:1030856‑M1/50‑12 (MQ=255)            aaTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacg                                   <  1:1655749‑M1/50‑12 (MQ=255)              tttCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggt                                 <  1:2083007‑M1/50‑14 (MQ=255)                tCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcc                               >  1:1965446‑M1/1‑35 (MQ=255)                tCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcc                               >  1:2517627‑M1/1‑35 (MQ=255)                 ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtccc                              >  1:2665731‑M1/1‑34 (MQ=255)                 ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtccc                              >  1:760965‑M1/1‑34 (MQ=255)                  cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtccc                              <  1:1139357‑M1/49‑17 (MQ=255)                   aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct                            <  1:1651762‑M1/50‑19 (MQ=255)                   aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct                            >  1:1772552‑M1/1‑32 (MQ=255)                    ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc                           >  1:1429710‑M1/1‑31 (MQ=255)                     gTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcg                          >  1:1805783‑M1/1‑30 (MQ=255)                        aGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccc                       >  1:2169048‑M1/1‑27 (MQ=255)                        aGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccc                       >  1:1219794‑M1/1‑27 (MQ=255)                           cGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccct                    <  1:1309526‑M1/50‑27 (MQ=255)                           cGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccct                    >  1:365417‑M1/1‑24 (MQ=255)                           cGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccct                    >  1:1102969‑M1/1‑24 (MQ=255)                            gggCTGCAAGTTGCAGACCGTTAcgagctggacggtcccctcgccccctt                   >  1:1717677‑M1/1‑23 (MQ=255)                            gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt                   >  1:2588659‑M1/1‑23 (MQ=255)                              gCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgg                 <  1:2723901‑M1/50‑30 (MQ=255)                                  cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga              <  1:1595326‑M1/49‑33 (MQ=255)                                     gTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagg          >  1:2232897‑M1/1‑14 (MQ=255)                                       tGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt        >  1:2435449‑M1/1‑12 (MQ=255)                                       tGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt        >  1:2426103‑M1/1‑12 (MQ=255)                                        gCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt        >  1:2663696‑M1/1‑11 (MQ=255)                                             ccGTTAcgagatggacggtcccctcgcccccttggtgattgggttagggt  >  1:2495778‑M1/1‑6 (MQ=255)                                             ccGTTAcgagatggacggtcccctcgcccccttggggagagggttagggt  <  1:1960815‑M1/50‑45 (MQ=255)                                              cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggt  >  1:329954‑M1/1‑5 (MQ=255)                                              cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggt  >  1:1063670‑M1/1‑5 (MQ=255)                                                  |                                             GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAG  >  NC_000913/380062‑380155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.