| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 35 (1.070) +CGAGAT |
20/86 | 0.2 | 69.0% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 36 (0.960) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
ACGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACC > NC_000913/4070395‑4070493 | tcagaatttccaggtcagacgggctgcaagttgcagaccgttacgagatg < 1:2431160‑M2/1‑1 (MQ=255)tcagaatttccaggtcagacgggctgcaagttgcagaccgttacgagatg < 1:1728895‑M2/1‑1 (MQ=255) cGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCgg < 1:1043001/50‑1 (MQ=255) agaatttccaggtcagacgggctgcaagttgcagaccgttacgagatgg < 1:1756896‑M2/2‑1 (MQ=255) gaatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGAc < 1:2313026‑M2/4‑1 (MQ=255) aatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGACg > 1:914173‑M2/46‑50 (MQ=255) aatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGACg < 1:1030856‑M2/5‑1 (MQ=255) aatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGACg > 1:334042‑M2/46‑50 (MQ=255) aatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGACg < 1:1655749‑M2/5‑1 (MQ=255) aTACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACgg > 1:2703913/1‑50 (MQ=255) aTACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACgg > 1:2245037/1‑50 (MQ=255) tttccaggtcagacgggctgcaagttgcagaccgttacgagatGGACGGt < 1:2083007‑M2/7‑1 (MQ=255) tACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGt > 1:90609/1‑50 (MQ=255) tccaggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTcc > 1:2517627‑M2/42‑50 (MQ=255) tccaggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTcc > 1:1965446‑M2/42‑50 (MQ=255) cAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTcc > 1:323134/1‑50 (MQ=255) cAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTc < 1:2042700/49‑1 (MQ=255) ccaggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTccc > 1:760965‑M2/41‑50 (MQ=255) ccaggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTccc > 1:2665731‑M2/41‑50 (MQ=255) aGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTccc < 1:2483171/50‑1 (MQ=255) gCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTcccc > 1:2201574/1‑50 (MQ=255) caggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTccc < 1:1139357‑M2/10‑1 (MQ=255) aggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCt > 1:1772552‑M2/39‑50 (MQ=255) aggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCt < 1:1651762‑M2/12‑1 (MQ=255) ggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTc > 1:1429710‑M2/38‑50 (MQ=255) cTCCCGTGAGGCTGACGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc < 1:2108307/50‑1 (MQ=255) tCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCg > 1:423434/1‑50 (MQ=255) tCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCg > 1:1166122/1‑50 (MQ=255) gtcagacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCg > 1:1805783‑M2/37‑50 (MQ=255) ccGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGcc < 1:1968475/50‑1 (MQ=255) cGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGccc < 1:2542098/50‑1 (MQ=255) cGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGccc > 1:499576/1‑50 (MQ=255) agacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGccc > 1:2169048‑M2/34‑50 (MQ=255) agacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGccc > 1:1219794‑M2/34‑50 (MQ=255) gTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGcccc > 1:1893520/1‑50 (MQ=255) tGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCt < 1:1081881/50‑1 (MQ=255) cgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTcgccccct > 1:365417‑M2/31‑48 (MQ=255) cgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTcgccccct > 1:1102969‑M2/31‑48 (MQ=255) cgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTcgccccct < 1:1309526‑M2/20‑3 (MQ=255) gggctgcaagttgcagaccgttacgagctGGACGGTCCCCTCGCCCCctt > 1:1717677‑M2/30‑50 (MQ=255) gggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCctt > 1:2588659‑M2/30‑50 (MQ=255) aGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCttt < 1:1969785/50‑1 (MQ=255) aGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCtt < 1:1912872/49‑1 (MQ=255) ggCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTg > 1:2220047/1‑50 (MQ=255) ggCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTg < 1:1622713/50‑1 (MQ=255) gctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTgg < 1:2723901‑M2/23‑1 (MQ=255) gCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTgg > 1:404894/1‑50 (MQ=255) tGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:1769519/1‑49 (MQ=255) caagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGga < 1:1595326‑M2/26‑1 (MQ=255) aTGTCAAGCCCAAAAGCTGCACCGGACGGTCCCCTCGCCCCTTTgggg < 1:2454039/48‑1 (MQ=25) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTgggg < 1:23039/48‑1 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTgggg < 1:2154253/48‑1 (MQ=255) gttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAgg > 1:2232897‑M2/21‑50 (MQ=255) cAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAggg > 1:1335693/1‑50 (MQ=255) tgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGt > 1:2435449‑M2/19‑50 (MQ=255) tgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGt > 1:2426103‑M2/19‑50 (MQ=255) gcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGt > 1:2663696‑M2/18‑49 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAggg < 1:1786986/50‑1 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAggg < 1:1760822/50‑1 (MQ=255) ccgttacgagatGGACGGTCCCCTCGCCCCCTTGGTGATTGGGTTagggt > 1:2495778‑M2/13‑49 (MQ=255) ccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTagggt < 1:1960815‑M2/38‑2 (MQ=255) cgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTagggt > 1:1063670‑M2/12‑48 (MQ=255) cgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTagggt > 1:329954‑M2/12‑48 (MQ=255) aaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGagag < 1:770706/50‑1 (MQ=255) aaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGagag < 1:1366854/50‑1 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgg < 1:898096/50‑1 (MQ=255) agCACCGGTCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgggg < 1:376651/49‑1 (MQ=255) cACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGa < 1:626867/49‑1 (MQ=255) cACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGa > 1:79683/1‑49 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaa < 1:2407417/50‑1 (MQ=255) cGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAc < 1:265932/50‑1 (MQ=255) ggACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAcc > 1:274110/1‑50 (MQ=255) | ACGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACC > NC_000913/4070395‑4070493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |