| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 40 [0] | [0] 42 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 39 (1.110) | 30/92 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > NC_000913/2867269‑2867314 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:745056/1‑50 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:1228276/1‑49 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:697652/1‑49 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT < 1:887496/50‑1 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT < 1:783193/50‑1 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATC < 1:2079994/50‑1 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA > 1:447129/1‑50 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 1:537418/1‑50 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT < 1:2488291/50‑1 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:282186/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:1793896/1‑50 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 1:756394/50‑1 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:389020/1‑50 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 1:2610505/1‑50 CCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC < 1:1534112/50‑1 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCG < 1:1840118/50‑1 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:1922747/1‑48 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:1944691/1‑48 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:266763/1‑48 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG > 1:1572320/1‑50 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG > 1:2474607/1‑50 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:2709990/1‑50 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC < 1:600033/50‑1 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA > 1:2539862/1‑50 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA > 1:546096/1‑50 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA > 1:2695915/1‑50 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGTGAGGCGACATCTC > 1:376801/1‑49 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCC < 1:715572/49‑1 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCC < 1:1668146/49‑1 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGC < 1:1934534/50‑1 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:2569409/1‑49 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCA < 1:150281/50‑1 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:207325/1‑48 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:180162/1‑48 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:730162/1‑50 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:739314/1‑50 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG < 1:326021/50‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG > 1:2155631/1‑50 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT < 1:2375619/49‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 1:466677/50‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > 1:202095/1‑50 GCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACG < 1:2457802/50‑1 CGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > 1:2390816/1‑49 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > NC_000913/2867269‑2867314 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |