| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 40 [0] | [0] 42 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 39 (1.110) | 30/92 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 | cggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat < 1:887496‑M2/1‑1 (MQ=255)cggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat < 1:783193‑M2/1‑1 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatc < 1:2079994‑M2/2‑1 (MQ=255) gcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca > 1:447129‑M2/48‑50 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat > 1:537418‑M2/47‑50 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat < 1:2488291‑M2/4‑1 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:1793896‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:282186‑M2/46‑50 (MQ=255) taatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATcc < 1:756394‑M2/6‑1 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:389020‑M2/44‑50 (MQ=255) tgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggc > 1:2610505‑M2/42‑50 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc < 1:1534112‑M2/12‑1 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGgcggcg < 1:1840118‑M2/13‑1 (MQ=255) attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:1922747‑M2/37‑48 (MQ=255) attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:266763‑M2/37‑48 (MQ=255) attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:1944691‑M2/37‑48 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag > 1:1572320‑M2/34‑50 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAgg > 1:2474607‑M2/33‑50 (MQ=255) gtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc < 1:600033‑M2/19‑1 (MQ=255) gtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 1:2709990‑M2/32‑50 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa > 1:546096‑M2/28‑50 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa > 1:2695915‑M2/28‑50 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa > 1:2539862‑M2/28‑50 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGTGAGGCGACAtctc > 1:376801‑M2/23‑49 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTcc < 1:1668146‑M2/28‑1 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTcc < 1:715572‑M2/28‑1 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:2569409‑M2/19‑49 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGc < 1:1934534‑M2/32‑1 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:207325‑M2/18‑48 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:180162‑M2/18‑48 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCa < 1:150281‑M2/33‑1 (MQ=255) taccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 1:739314‑M2/17‑50 (MQ=255) taccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 1:730162‑M2/17‑50 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 1:2375619‑M2/35‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg > 1:2155631‑M2/15‑50 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 1:326021‑M2/36‑1 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc < 1:466677‑M2/42‑1 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 1:202095‑M2/9‑50 (MQ=255) gcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg < 1:2457802‑M2/43‑1 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc > 1:2390816‑M2/4‑49 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa < 1:307879/50‑1 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa < 1:2601925/50‑1 (MQ=255) | TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |