| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 40 [0] | [0] 42 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 39 (1.110) | 30/92 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGC > NC_000913/2846252‑2846346 | cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt < 1:887496‑M1/50‑2 (MQ=255)cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt < 1:783193‑M1/50‑2 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtc < 1:2079994‑M1/50‑3 (MQ=255) gCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtca > 1:447129‑M1/1‑47 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat > 1:537418‑M1/1‑46 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat < 1:2488291‑M1/50‑5 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:1793896‑M1/1‑45 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:282186‑M1/1‑45 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc < 1:756394‑M1/50‑7 (MQ=255) aaTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg > 1:389020‑M1/1‑43 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggc > 1:2610505‑M1/1‑41 (MQ=255) ccATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc < 1:1534112‑M1/50‑13 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcg < 1:1840118‑M1/50‑14 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:1922747‑M1/1‑36 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:266763‑M1/1‑36 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:1944691‑M1/1‑36 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:1572320‑M1/1‑33 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagagg > 1:2474607‑M1/1‑32 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc < 1:600033‑M1/50‑20 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc > 1:2709990‑M1/1‑31 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgaca > 1:2695915‑M1/1‑27 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgaca > 1:546096‑M1/1‑27 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgaca > 1:2539862‑M1/1‑27 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgtgaggcgacatctc > 1:376801‑M1/1‑22 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcc < 1:715572‑M1/49‑29 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcc < 1:1668146‑M1/49‑29 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgc < 1:1934534‑M1/50‑33 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:2569409‑M1/1‑18 (MQ=255) ttACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgca < 1:150281‑M1/50‑34 (MQ=255) ttACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:207325‑M1/1‑17 (MQ=255) ttACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:180162‑M1/1‑17 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:730162‑M1/1‑16 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:739314‑M1/1‑16 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg < 1:326021‑M1/50‑37 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg > 1:2155631‑M1/1‑14 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagt < 1:2375619‑M1/49‑36 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 1:466677‑M1/50‑43 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac > 1:202095‑M1/1‑8 (MQ=255) gCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacg < 1:2457802‑M1/50‑44 (MQ=255) cGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgc > 1:2390816‑M1/1‑3 (MQ=255) | CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGC > NC_000913/2846252‑2846346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |