Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,299,628 Δ25,538 bp [mdtP]–[phnC] 27 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4299628 4325165 25538 37 [0] [0] 36 [mdtP]–[phnC] [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42996270 (0.000)36 (0.960) 31/98 0.0 100% coding (1404/1467 nt) mdtP putative multidrug efflux pump outer membrane channel
?NC_000913 4325166 = 0 (0.000)intergenic (‑1/+132) phnC/yjdN phosphonate ABC transporter ATP binding subunit/conserved protein YjdN

ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4299580‑4299627
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA  >  NC_000913/4325166‑4325213
                                                                                                
ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA                                                <  1:2632415/50‑1
 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT                                               <  1:2503994/50‑1
  GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG                                              >  1:2549629/1‑50
   GGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG                                              >  1:2719901/1‑49
    GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCA                                            <  1:1558374/50‑1
    GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG                                              >  1:1447678/1‑48
       CTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC                                         >  1:1364972/1‑50
         GCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTC                                       >  1:2771359/1‑50
          CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCC                                      <  1:1160786/50‑1
           CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC                                     >  1:835729/1‑50
              ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCT                                    <  1:361495/48‑1
                ACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAA                                 >  1:350569/1‑49
                 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA                                <  1:2712954/49‑1
                  CCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAA                              <  1:2760778/50‑1
                       GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC                         >  1:1542493/1‑50
                          CAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC                       >  1:1619469/1‑49
                           AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA                     >  1:2600887/1‑50
                             CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC                   <  1:1092774/50‑1
                             CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC                   <  1:669321/50‑1
                              GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG                  <  1:517935/50‑1
                              GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG                  <  1:1859771/50‑1
                                 TTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG               >  1:2563661/1‑50
                                 TTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG               >  1:2354283/1‑50
                                   CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG             >  1:1576591/1‑50
                                   CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC              <  1:1128493/49‑1
                                       AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT          >  1:741317/1‑49
                                       AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT          <  1:2621058/49‑1
                                        ACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTA        >  1:2731000/1‑50
                                         CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTAT       >  1:77431/1‑50
                                         CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTAT       <  1:1426412/50‑1
                                          TGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT      >  1:101102/1‑50
                                          TGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT      >  1:761596/1‑50
                                            AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT    >  1:472197/1‑50
                                             ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT    >  1:2366262/1‑49
                                              TGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA  >  1:542977/1‑50
                                              TGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA  >  1:8535/1‑50
                                                                                                
ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4299580‑4299627
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA  >  NC_000913/4325166‑4325213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.