| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 37 [0] | [0] 36 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 36 (0.960) | 31/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
CTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA > NC_000913/4325118‑4325213 | acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa < 1:2632415‑M2/2‑1 (MQ=255) cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt < 1:2503994‑M2/3‑1 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:2549629‑M2/47‑50 (MQ=255) ggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:2719901‑M2/46‑49 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:1447678‑M2/45‑48 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 1:1558374‑M2/6‑1 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc > 1:1364972‑M2/42‑50 (MQ=255) gcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTc > 1:2771359‑M2/40‑50 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTcc < 1:1160786‑M2/12‑1 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:835729‑M2/38‑50 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCt < 1:361495‑M2/14‑1 (MQ=255) acccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaa > 1:350569‑M2/33‑49 (MQ=255) cccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaa < 1:2712954‑M2/18‑1 (MQ=255) ccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaaaa < 1:2760778‑M2/20‑1 (MQ=255) gcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGc > 1:1542493‑M2/26‑50 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:1619469‑M2/23‑49 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa > 1:2600887‑M2/22‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:1092774‑M2/31‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:669321‑M2/31‑1 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg < 1:517935‑M2/32‑1 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg < 1:1859771‑M2/32‑1 (MQ=255) ttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg > 1:2563661‑M2/16‑50 (MQ=255) ttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg > 1:2354283‑M2/16‑50 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGc < 1:1128493‑M2/36‑1 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:1576591‑M2/14‑50 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 1:741317‑M2/10‑49 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat < 1:2621058‑M2/40‑1 (MQ=255) actgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatta > 1:2731000‑M2/9‑50 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat > 1:77431‑M2/8‑50 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:1426412‑M2/43‑1 (MQ=255) tgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt > 1:101102‑M2/7‑50 (MQ=255) tgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt > 1:761596‑M2/7‑50 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt > 1:472197‑M2/5‑50 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt > 1:2366262‑M2/4‑49 (MQ=255) tgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGa > 1:542977‑M2/3‑50 (MQ=255) tgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGa > 1:8535‑M2/3‑50 (MQ=255) | CTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA > NC_000913/4325118‑4325213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |