| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 37 [0] | [0] 36 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 36 (0.960) | 31/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCG > NC_000913/4299578‑4299675 | cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg < 1:1847613/50‑1 (MQ=255) aCGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGga < 1:2632415‑M1/50‑3 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:2503994‑M1/50‑4 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:2549629‑M1/1‑46 (MQ=255) ggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:2719901‑M1/1‑45 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgca < 1:1558374‑M1/50‑7 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:1447678‑M1/1‑44 (MQ=255) ctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc > 1:1364972‑M1/1‑41 (MQ=255) gcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctc > 1:2771359‑M1/1‑39 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcc < 1:1160786‑M1/50‑13 (MQ=255) ctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc > 1:835729‑M1/1‑37 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct < 1:361495‑M1/48‑15 (MQ=255) aCCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaa > 1:350569‑M1/1‑32 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaa < 1:2712954‑M1/49‑19 (MQ=255) ccgccgCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaa < 1:2760778‑M1/50‑21 (MQ=255) gccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggc > 1:1542493‑M1/1‑25 (MQ=255) cAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc > 1:1619469‑M1/1‑22 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca > 1:2600887‑M1/1‑21 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:669321‑M1/50‑32 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:1092774‑M1/50‑32 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg < 1:1859771‑M1/50‑33 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg < 1:517935‑M1/50‑33 (MQ=255) ttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtgg > 1:2563661‑M1/1‑15 (MQ=255) ttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtgg > 1:2354283‑M1/1‑15 (MQ=255) catcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg > 1:1576591‑M1/1‑13 (MQ=255) catcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggc < 1:1128493‑M1/49‑37 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat < 1:2621058‑M1/49‑41 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat > 1:741317‑M1/1‑9 (MQ=255) aCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatta > 1:2731000‑M1/1‑8 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat < 1:1426412‑M1/50‑44 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat > 1:77431‑M1/1‑7 (MQ=255) tGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt > 1:101102‑M1/1‑6 (MQ=255) tGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt > 1:761596‑M1/1‑6 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt > 1:472197‑M1/1‑4 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt > 1:2366262‑M1/1‑3 (MQ=255) tGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtga > 1:542977‑M1/1‑2 (MQ=255) tGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtga > 1:8535‑M1/1‑2 (MQ=255) | CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCG > NC_000913/4299578‑4299675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |