Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,555,491 Δ41,523 bp [yjiC]–lgoD 37 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4555491 4597013 41523 39 [0] [0] 37 [yjiC]–lgoD [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 45554900 (0.000)36 (0.980) 27/96 0.1 100% coding (831/831 nt) yjiC uncharacterized protein YjiC
?NC_000913 4597014 = 0 (0.000)intergenic (+2/+136) lgoD/opgB L‑galactonate oxidoreductase/phosphoglycerol transferase I

TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555442‑4555490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  NC_000913/4597014‑4597062
                                                                                                  
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   >  1:1323728/1‑49
 TTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   >  1:2275483/1‑48
  TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG                                                >  1:2508737/1‑50
   AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG                                               >  1:736380/1‑50
   AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG                                               >  1:451629/1‑50
      TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:328189/1‑48
      TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:2800354/1‑48
      TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:1770470/1‑48
       ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:200216/1‑47
         CTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                         >  1:1521095/1‑50
           GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA                                       >  1:457359/1‑50
           GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA                                       >  1:432651/1‑50
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT                                      >  1:1287876/1‑50
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT                                        <  1:2412838/48‑1
              TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA                                    <  1:1487101/50‑1
                ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA                                    >  1:97951/1‑48
                  CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT                                >  1:30205/1‑50
                     AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC                             >  1:2769819/1‑50
                     AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC                             >  1:1110693/1‑50
                         TTAGTCCTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT                          <  1:777419/49‑1
                           AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGC                        <  1:1527603/49‑1
                             TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC                     >  1:1255579/1‑50
                              ACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG                    >  1:1643346/1‑50
                                TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC                  >  1:1797214/1‑50
                                  ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC                 <  1:2563158/49‑1
                                  ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC                  <  1:1584591/48‑1
                                  ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC                  <  1:1120165/48‑1
                                   TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG               >  1:345834/1‑50
                                     CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG              <  1:245583/49‑1
                                       TCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG             >  1:1335600/1‑48
                                         CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT         <  1:30501/50‑1
                                         CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT         <  1:946628/50‑1
                                           GGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT       >  1:1234483/1‑50
                                            GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT      <  1:558373/50‑1
                                            GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT      <  1:966396/50‑1
                                            GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT       <  1:862499/49‑1
                                            GTAGTAAGGAGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT      <  1:558305/50‑1
                                               GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG    <  1:1821282/49‑1
                                                TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  <  1:1036896/50‑1
                                                                                                  
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555442‑4555490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  NC_000913/4597014‑4597062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.