| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 39 [0] | [0] 37 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 36 (0.980) | 27/96 | 0.1 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 | tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:1323728‑M1/1‑49 (MQ=255) ttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:2275483‑M1/1‑48 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag > 1:2508737‑M1/1‑47 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg > 1:736380‑M1/1‑46 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg > 1:451629‑M1/1‑46 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:328189‑M1/1‑43 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:2800354‑M1/1‑43 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:1770470‑M1/1‑43 (MQ=255) aTCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:200216‑M1/1‑42 (MQ=255) cTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat > 1:1521095‑M1/1‑40 (MQ=255) gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta > 1:457359‑M1/1‑38 (MQ=255) gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta > 1:432651‑M1/1‑38 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat > 1:1287876‑M1/1‑37 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatt < 1:2412838‑M1/48‑12 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta < 1:1487101‑M1/50‑16 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:97951‑M1/1‑33 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 1:30205‑M1/1‑31 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:2769819‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:1110693‑M1/1‑28 (MQ=255) ttAGTCCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat < 1:777419‑M1/49‑26 (MQ=255) aGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgc < 1:1527603‑M1/49‑28 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc > 1:1255579‑M1/1‑20 (MQ=255) aCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg > 1:1643346‑M1/1‑19 (MQ=255) tCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc > 1:1797214‑M1/1‑17 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc < 1:2563158‑M1/49‑35 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc < 1:1584591‑M1/48‑34 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc < 1:1120165‑M1/48‑34 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg > 1:345834‑M1/1‑14 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg < 1:245583‑M1/49‑38 (MQ=255) tcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg > 1:1335600‑M1/1‑10 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 1:30501‑M1/50‑43 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 1:946628‑M1/50‑43 (MQ=255) ggTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagtgt > 1:1234483‑M1/1‑6 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt < 1:558373‑M1/50‑46 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt < 1:966396‑M1/50‑46 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgt < 1:862499‑M1/49‑45 (MQ=255) gtagtaaggagagattattaaagttgccatgcagcgtccggggaagtgtt < 1:558305‑M1/50‑46 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 1:1821282‑M1/49‑48 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 1:1036896‑M1/50‑50 (MQ=255) | TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |