| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 39 [0] | [0] 37 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 36 (0.980) | 27/96 | 0.1 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
TGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4596967‑4597062 | tagctatctgtataacctgaatgttagtactcattcttcctggtagtAAg > 1:2508737‑M2/48‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg > 1:736380‑M2/47‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg > 1:451629‑M2/47‑50 (MQ=255) tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:328189‑M2/44‑48 (MQ=255) tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:2800354‑M2/44‑48 (MQ=255) tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:1770470‑M2/44‑48 (MQ=255) atctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:200216‑M2/43‑47 (MQ=255) ctgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat > 1:1521095‑M2/41‑50 (MQ=255) gtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta > 1:457359‑M2/39‑50 (MQ=255) gtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta > 1:432651‑M2/39‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:1287876‑M2/38‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatt < 1:2412838‑M2/11‑1 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta < 1:1487101‑M2/15‑1 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta > 1:97951‑M2/34‑48 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt > 1:30205‑M2/32‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:2769819‑M2/29‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:1110693‑M2/29‑50 (MQ=255) ttagtcctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 1:777419‑M2/25‑1 (MQ=255) agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGc < 1:1527603‑M2/27‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc > 1:1255579‑M2/21‑50 (MQ=255) actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg > 1:1643346‑M2/20‑50 (MQ=255) tcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc > 1:1797214‑M2/18‑50 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 1:2563158‑M2/34‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc < 1:1584591‑M2/33‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc < 1:1120165‑M2/33‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg > 1:345834‑M2/15‑50 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg < 1:245583‑M2/37‑1 (MQ=255) tcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:1335600‑M2/11‑48 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt < 1:30501‑M2/42‑1 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt < 1:946628‑M2/42‑1 (MQ=255) ggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt > 1:1234483‑M2/7‑50 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt < 1:862499‑M2/44‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:558373‑M2/45‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:966396‑M2/45‑1 (MQ=255) gtagtAAGGAGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:558305‑M2/45‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg < 1:1821282‑M2/47‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:1036896‑M2/49‑1 (MQ=255) | TGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4596967‑4597062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |