| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,601,201 | Δ13,595 bp | [hyfA]–focB | [hyfA], hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2601201 | 2614795 | 13595 | 56 [0] | [0] 55 | [hyfA]–focB | [hyfA],hyfB,hyfC,hyfD,hyfE,hyfF,hyfG,hyfH,hyfI,hyfJ,hyfR,focB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2601200 | 0 (0.000) | 55 (1.470) | 39/98 | 0.0 | 100% | intergenic (+252/‑1) | bcp/hyfA | thiol peroxidase/hydrogenase 4 component A |
| ? | NC_000913 | 2614796 = | 0 (0.000) | intergenic (+14/+24) | focB/yfgO | putative formate transporter/putative transporter YfgO | |||||
CTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACATGAACCGCTTTGTGGTGGCCGAACCACTGTGGTGTACAGGATGTAA > NC_000913/2601151‑2601247 | cTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGAc < 1:364919/50‑1 (MQ=255) ttATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACc > 1:2321265‑M1/1‑48 (MQ=255) ttATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACc > 1:2015244‑M1/1‑48 (MQ=255) tATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcg > 1:424324‑M1/1‑47 (MQ=255) tATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACc < 1:2798934‑M1/48‑2 (MQ=255) gCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaa > 1:2160866‑M1/1‑44 (MQ=255) cAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaaca < 1:2248345‑M1/50‑8 (MQ=255) cAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaac < 1:1079576‑M1/49‑7 (MQ=255) atatGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagt > 1:78568‑M1/1‑41 (MQ=255) tatGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagtt < 1:1487484‑M1/50‑11 (MQ=255) atGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttc > 1:2414377‑M1/1‑39 (MQ=255) atGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttc > 1:2109829‑M1/1‑39 (MQ=255) tGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACtgaaacagttc < 1:1540725‑M1/49‑12 (MQ=255) tGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcg > 1:724585‑M1/1‑38 (MQ=255) gAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgt > 1:2484198‑M1/1‑37 (MQ=255) aaaTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtc > 1:2037963‑M1/1‑36 (MQ=255) aaaTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtc > 1:1622399‑M1/1‑36 (MQ=255) aaTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcg > 1:1399945‑M1/1‑35 (MQ=255) aaTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcg > 1:1385350‑M1/1‑35 (MQ=255) aTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgg > 1:2624204‑M1/1‑34 (MQ=255) aTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgg > 1:1291133‑M1/1‑34 (MQ=255) aTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgg > 1:699787‑M1/1‑34 (MQ=255) aTGCAATGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgg > 1:2298938‑M1/1‑34 (MQ=255) aaTGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctg < 1:725191‑M1/50‑21 (MQ=255) aaTGTTTCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggct > 1:884029‑M1/1‑30 (MQ=255) tttCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctg > 1:592830‑M1/1‑26 (MQ=255) tttCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctg > 1:2706570‑M1/1‑26 (MQ=255) tCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagat > 1:2740154‑M1/1‑24 (MQ=255) tCATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagat > 1:2701440‑M1/1‑24 (MQ=255) cATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagatta > 1:2002301‑M1/1‑23 (MQ=255) cATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagatta > 1:377159‑M1/1‑23 (MQ=255) cATATCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagatt < 1:1952556‑M1/49‑27 (MQ=255) atatCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattat > 1:101999‑M1/1‑22 (MQ=255) atatCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagatta < 1:1258291‑M1/49‑28 (MQ=255) tatCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattatt < 1:757896‑M1/50‑30 (MQ=255) tatCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattatt < 1:367150‑M1/50‑30 (MQ=255) tCATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattct < 1:1804119‑M1/50‑32 (MQ=255) cATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattctt > 1:1095704‑M1/1‑18 (MQ=255) cATTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattctt > 1:2160359‑M1/1‑18 (MQ=255) aTTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttg < 1:2673853‑M1/50‑34 (MQ=255) aTTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttg > 1:1340975‑M1/1‑17 (MQ=255) aTTTTCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattctt < 1:649119‑M1/49‑33 (MQ=255) tttCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcg > 1:1821364‑M1/1‑15 (MQ=255) tttCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcg > 1:2376762‑M1/1‑15 (MQ=255) tCAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgc < 1:2727779‑M1/49‑37 (MQ=255) cAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcg < 1:2361554‑M1/49‑38 (MQ=255) cAAGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcg < 1:191772‑M1/49‑38 (MQ=255) aGGAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcgatt < 1:2614369‑M1/50‑41 (MQ=255) ggAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcgattt > 1:1928319‑M1/1‑9 (MQ=255) ggAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcgattt < 1:2112504‑M1/50‑42 (MQ=255) gAGCCGACcgaaacagttcgtcgggctgaagattattcttgcgcgatttg > 1:2650098‑M1/1‑8 (MQ=255) cgaccgaaacagttcgtcgggctgaagattattcttgcgcgatttgccca < 1:2231784‑M1/50‑47 (MQ=255) cgaccgaaacagttcgtcgggctgaagattattcttgcgcgatttgccca < 1:958813‑M1/50‑47 (MQ=255) gaccgaaacagttcgtcgggctgaagattattcttgcgcgatttgcccat < 1:545571‑M1/50‑48 (MQ=255) gaccgaaacagttcgtcgggctgaagattattcttgcgcgatttgcccat < 1:2191574‑M1/50‑48 (MQ=255) gaccgaaacagttcgtcgggctgaagattattcttgcacgatttgcccat > 1:1908459‑M1/1‑3 (MQ=255) | CTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACATGAACCGCTTTGTGGTGGCCGAACCACTGTGGTGTACAGGATGTAA > NC_000913/2601151‑2601247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |