| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 38 [0] | [0] 37 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 37 (1.220) | 28/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400275‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 CCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTA > 1:634379/1‑50 CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT < 1:2228341/50‑1 ATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:1199828/1‑49 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGC < 1:1413419/49‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG < 1:2435608/48‑1 CGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:214524/1‑47 GCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAA < 1:1005334/50‑1 GCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAA < 1:596783/50‑1 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC < 1:2023807/50‑1 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:233804/1‑49 GACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACA < 1:614182/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 1:360737/1‑50 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 1:1297395/1‑49 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA > 1:1478419/1‑50 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA > 1:1753389/1‑50 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT < 1:771571/50‑1 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG < 1:2028854/49‑1 CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC > 1:519637/1‑50 ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT > 1:2629168/1‑50 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG < 1:1755275/50‑1 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG < 1:851602/50‑1 cGCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 1:2414772/2‑48 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 1:1734150/1‑47 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 1:1036546/1‑47 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA > 1:1379091/1‑50 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT < 1:974809/50‑1 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT > 1:1605559/1‑50 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT < 1:1275418/50‑1 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTCTGCGTCAGACT > 1:818384/1‑50 CCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTG > 1:1304739/1‑50 CCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTG > 1:893892/1‑50 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT > 1:2098571/1‑50 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT > 1:1690481/1‑50 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG > 1:1996851/1‑50 TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC < 1:550178/50‑1 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > 1:2287495/1‑50 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT < 1:1271974/49‑1 CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400275‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |