| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 38 [0] | [0] 37 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 37 (1.220) | 28/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
TGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482208‑1482304 | cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa > 1:634379‑M2/49‑50 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt < 1:2228341‑M2/3‑1 (MQ=255) atcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:1199828‑M2/46‑49 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATg < 1:2435608‑M2/4‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGc < 1:1413419‑M2/5‑1 (MQ=255) cggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:214524‑M2/44‑47 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaa < 1:1005334‑M2/9‑1 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaa < 1:596783‑M2/9‑1 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:233804‑M2/40‑49 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc < 1:2023807‑M2/11‑1 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACa < 1:614182‑M2/12‑1 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc > 1:360737‑M2/31‑50 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc > 1:1297395‑M2/30‑49 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa > 1:1478419‑M2/29‑50 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa > 1:1753389‑M2/29‑50 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 1:771571‑M2/23‑1 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg < 1:2028854‑M2/24‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc > 1:519637‑M2/25‑50 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct > 1:2629168‑M2/24‑50 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg < 1:1755275‑M2/28‑1 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg < 1:851602‑M2/28‑1 (MQ=255) cgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:2414772‑M2/12‑48 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:1734150‑M2/11‑47 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:1036546‑M2/11‑47 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:1379091‑M2/10‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 1:974809‑M2/43‑1 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt > 1:1605559‑M2/8‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 1:1275418‑M2/43‑1 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTCTGCGTCAGACt > 1:818384‑M2/8‑50 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg > 1:1304739‑M2/7‑50 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg > 1:893892‑M2/7‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:2098571‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:1690481‑M2/6‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg > 1:1996851‑M2/5‑50 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc < 1:550178‑M2/47‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 1:2287495‑M2/2‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt < 1:1271974‑M2/48‑1 (MQ=255) | TGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482208‑1482304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |