| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 38 [0] | [0] 37 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 37 (1.220) | 28/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
ACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCC > NC_000913/1400274‑1400373 | aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATact < 1:1769435/50‑2 (MQ=255) ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta > 1:634379‑M1/1‑48 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 1:2228341‑M1/50‑4 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:1199828‑M1/1‑45 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc < 1:1413419‑M1/49‑6 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg < 1:2435608‑M1/48‑5 (MQ=255) cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:214524‑M1/1‑43 (MQ=255) gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa < 1:1005334‑M1/50‑10 (MQ=255) gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa < 1:596783‑M1/50‑10 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac < 1:2023807‑M1/50‑12 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:233804‑M1/1‑39 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca < 1:614182‑M1/50‑13 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc > 1:360737‑M1/1‑30 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc > 1:1297395‑M1/1‑29 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga > 1:1478419‑M1/1‑28 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga > 1:1753389‑M1/1‑28 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:771571‑M1/50‑24 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg < 1:2028854‑M1/49‑25 (MQ=255) cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc > 1:519637‑M1/1‑24 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct > 1:2629168‑M1/1‑23 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg < 1:1755275‑M1/50‑29 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg < 1:851602‑M1/50‑29 (MQ=255) cgcagccATACtatgcagaaacaatgctgtcgatggctgcttttgcgt > 1:2414772‑M1/2‑11 (MQ=255) gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgt > 1:1734150‑M1/1‑10 (MQ=255) gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgt > 1:1036546‑M1/1‑10 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga > 1:1379091‑M1/1‑9 (MQ=255) gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagact < 1:974809‑M1/50‑44 (MQ=255) gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagact > 1:1605559‑M1/1‑7 (MQ=255) gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagact < 1:1275418‑M1/50‑44 (MQ=255) gcCATACtatgcagaaacaatgctgtcgatggctgcttctgcgtcagact > 1:818384‑M1/1‑7 (MQ=255) ccATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactg > 1:1304739‑M1/1‑6 (MQ=255) ccATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactg > 1:893892‑M1/1‑6 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt > 1:2098571‑M1/1‑5 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt > 1:1690481‑M1/1‑5 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg > 1:1996851‑M1/1‑4 (MQ=255) tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc < 1:550178‑M1/50‑48 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgctt > 1:2287495‑M1/1‑1 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgct < 1:1271974‑M1/49‑49 (MQ=255) | ACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCC > NC_000913/1400274‑1400373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |