| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 30 [0] | [0] 30 | [dgcJ] | [dgcJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 0 (0.000) | 30 (1.010) | 27/96 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
GCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871982‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA > NC_000913/1873467‑1873514 GCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGAT < 1:2622826/50‑1 CCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATG > 1:27985/1‑50 GCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCG > 1:1587829/1‑50 AATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTA > 1:1390587/1‑50 ATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTAT < 1:1567560/50‑1 ATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTA > 1:470261/1‑49 ATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTA > 1:132712/1‑49 CGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA > 1:930425/1‑49 AACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAG < 1:1938772/50‑1 ACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGC < 1:2549356/50‑1 TATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC > 1:349626/1‑50 ATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC < 1:1817914/49‑1 CTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGAT > 1:884021/1‑50 TGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGAT > 1:2014547/1‑49 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGA < 1:1988871/49‑1 TTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCG > 1:2076982/1‑50 TTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCG > 1:1123868/1‑50 TTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGT > 1:2349208/1‑50 TTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCG < 1:1080644/49‑1 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA < 1:1407335/48‑1 TTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATAT > 1:754477/1‑50 TTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATG > 1:2617605/1‑50 CACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGT > 1:1250293/1‑49 ACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTC > 1:2091203/1‑49 ACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTC > 1:1557987/1‑49 TAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAA > 1:1773661/1‑49 AACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAT > 1:1007298/1‑49 AGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAG > 1:1069394/1‑49 GAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAA > 1:891890/1‑49 AGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA < 1:1318055/50‑1 GCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871982‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA > NC_000913/1873467‑1873514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |