| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 30 [0] | [0] 30 | [dgcJ] | [dgcJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 0 (0.000) | 30 (1.010) | 27/96 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
GCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGTGCCATTTATCATGAAATTGCACCATAGAATGCTCCGGCATTTTATCG > NC_000913/1871982‑1872077 | gCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGat < 1:2622826‑M1/50‑3 (MQ=255) ccGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatg > 1:27985‑M1/1‑47 (MQ=255) gCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcg > 1:1587829‑M1/1‑45 (MQ=255) aaTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:1390587‑M1/1‑43 (MQ=255) aTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtat < 1:1567560‑M1/50‑9 (MQ=255) aTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:470261‑M1/1‑42 (MQ=255) aTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:132712‑M1/1‑42 (MQ=255) cGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtata > 1:930425‑M1/1‑40 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag < 1:1938772‑M1/50‑13 (MQ=255) aCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagc < 1:2549356‑M1/50‑14 (MQ=255) tATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttcc > 1:349626‑M1/1‑33 (MQ=255) aTCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttcc < 1:1817914‑M1/49‑18 (MQ=255) cTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgat > 1:884021‑M1/1‑30 (MQ=255) tGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgat > 1:2014547‑M1/1‑29 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatga < 1:1988871‑M1/49‑23 (MQ=255) tttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcg > 1:2076982‑M1/1‑25 (MQ=255) tttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcg > 1:1123868‑M1/1‑25 (MQ=255) ttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgt > 1:2349208‑M1/1‑24 (MQ=255) ttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcg < 1:1080644‑M1/49‑26 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgttta < 1:1407335‑M1/48‑30 (MQ=255) tttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatat > 1:754477‑M1/1‑18 (MQ=255) ttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg > 1:2617605‑M1/1‑17 (MQ=255) cACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgt > 1:1250293‑M1/1‑15 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc > 1:2091203‑M1/1‑14 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc > 1:1557987‑M1/1‑14 (MQ=255) tAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaa > 1:1773661‑M1/1‑12 (MQ=255) aaCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaat > 1:1007298‑M1/1‑11 (MQ=255) aGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag > 1:1069394‑M1/1‑5 (MQ=255) gagatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaa > 1:891890‑M1/1‑3 (MQ=255) agatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaaca < 1:1318055‑M1/50‑49 (MQ=255) | GCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGTGCCATTTATCATGAAATTGCACCATAGAATGCTCCGGCATTTTATCG > NC_000913/1871982‑1872077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |