Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 30 [0] | [0] 30 | [dgcJ] | [dgcJ] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1872029 | 0 (0.000) | 30 (1.010) | 27/96 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ |
GCTTCTCTTCCGGTATTTACGCGATGAAAGAAAACGATACGTTACATGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA > NC_000913/1873419‑1873514 | gccgcaatcgaactttatctggttttctcgtttcactaaccgaaggagAt < 1:2622826‑M2/2‑1 (MQ=255) ccgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATg > 1:27985‑M2/48‑50 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg > 1:1587829‑M2/46‑50 (MQ=255) aatcgaactttatctggttttctcgtttcactaaccgaaggagATGCGta > 1:1390587‑M2/44‑50 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtat < 1:1567560‑M2/8‑1 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGta > 1:470261‑M2/43‑49 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGta > 1:132712‑M2/43‑49 (MQ=255) cgaactttatctggttttctcgtttcactaaccgaaggagATGCGtata > 1:930425‑M2/41‑49 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg < 1:1938772‑M2/12‑1 (MQ=255) actttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGc < 1:2549356‑M2/13‑1 (MQ=255) tatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTcc > 1:349626‑M2/34‑50 (MQ=255) atctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTcc < 1:1817914‑M2/17‑1 (MQ=255) ctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt > 1:884021‑M2/31‑50 (MQ=255) tggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt > 1:2014547‑M2/30‑49 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGa < 1:1988871‑M2/22‑1 (MQ=255) tttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCg > 1:2076982‑M2/26‑50 (MQ=255) tttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCg > 1:1123868‑M2/26‑50 (MQ=255) ttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCg < 1:1080644‑M2/25‑1 (MQ=255) ttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGt > 1:2349208‑M2/25‑50 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta < 1:1407335‑M2/29‑1 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat > 1:754477‑M2/19‑50 (MQ=255) ttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATg > 1:2617605‑M2/18‑50 (MQ=255) cactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGt > 1:1250293‑M2/16‑49 (MQ=255) actaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTc > 1:2091203‑M2/15‑49 (MQ=255) actaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTc > 1:1557987‑M2/15‑49 (MQ=255) taaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa > 1:1773661‑M2/13‑49 (MQ=255) aaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAt > 1:1007298‑M2/12‑49 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAg > 1:1069394‑M2/6‑49 (MQ=255) gagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGaa > 1:891890‑M2/4‑49 (MQ=255) agATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa < 1:1318055‑M2/48‑1 (MQ=255) | GCTTCTCTTCCGGTATTTACGCGATGAAAGAAAACGATACGTTACATGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA > NC_000913/1873419‑1873514 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |