| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,101,397 | Δ36,321 bp | [wbbL]–wza | 34 genes [wbbL], insH‑7, wbbL, wbbK, wbbJ, wbbI, wbbH, glf, rfbX, rfbC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ, cpsG, cpsB, wcaI, gmm, fcl, gmd, wcaF, wcaE, wcaD, wcaC, wcaB, wcaA, wzc, wzb, wza |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2101397 | 2137717 | 36321 | 36 [0] | [0] 32 | [wbbL]–wza | [wbbL],insH‑7,wbbL,wbbK,wbbJ,wbbI,wbbH,glf,rfbX,rfbC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ,cpsG,cpsB,wcaI,gmm,fcl,gmd,wcaF,wcaE,wcaD,wcaC,wcaB,wcaA,wzc,wzb,wza |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2101396 | 0 (0.000) | 32 (1.070) | 27/96 | 0.0 | 100% | pseudogene (349/349 nt) | wbbL | interrupted rhamnosyltransferase WbbL |
| ? | NC_000913 | 2137718 = | 0 (0.000) | intergenic (‑475/‑184) | wza/yegH | outer membrane polysaccharide export protein Wza/inner membrane protein YegH | |||||
TATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2101347‑2101396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTT > NC_000913/2137718‑2137765 TATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT > 1:383393/1‑50TATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT > 1:2011735/1‑50 ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATG > 1:1708622/1‑50 ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATG > 1:1731614/1‑50 ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT < 1:2537975/49‑1 ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT < 1:2409588/49‑1 TAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTC > 1:1603986/1‑50 AGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTC > 1:1350215/1‑49 TATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTTCA > 1:2298993/1‑49 TATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCAC < 1:2115989/50‑1 ATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACA > 1:2427921/1‑50 TAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACAT < 1:876300/50‑1 AATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATG < 1:605038/49‑1 ATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGC > 1:1230130/1‑49 TATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTT > 1:348678/1‑50 ATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATT < 1:1771537/48‑1 TCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCT < 1:2154333/50‑1 ATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAA < 1:961359/50‑1 GCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAA > 1:816894/1‑49 GCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAA > 1:852799/1‑49 CTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATA < 1:2067857/50‑1 CTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAAT < 1:749222/49‑1 CTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAAT < 1:1455089/49‑1 TATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAAT > 1:2402617/1‑50 TATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATG < 1:2153172/49‑1 TGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTT < 1:1399269/49‑1 GCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTT > 1:2250774/1‑49 CTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTA < 1:2632818/50‑1 CTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTT < 1:340685/49‑1 ACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATT < 1:432935/49‑1 ACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATT < 1:52991/49‑1 ACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATT < 1:108597/49‑1 CGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTAT > 1:1926375/1‑50 GGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATT < 1:2009963/50‑1 GGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTAT > 1:1671341/1‑49 ATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTT > 1:1125123/1‑50 TATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2101347‑2101396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTT > NC_000913/2137718‑2137765 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |