| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,101,397 | Δ36,321 bp | [wbbL]–wza | 34 genes [wbbL], insH‑7, wbbL, wbbK, wbbJ, wbbI, wbbH, glf, rfbX, rfbC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ, cpsG, cpsB, wcaI, gmm, fcl, gmd, wcaF, wcaE, wcaD, wcaC, wcaB, wcaA, wzc, wzb, wza |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2101397 | 2137717 | 36321 | 36 [0] | [0] 32 | [wbbL]–wza | [wbbL],insH‑7,wbbL,wbbK,wbbJ,wbbI,wbbH,glf,rfbX,rfbC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ,cpsG,cpsB,wcaI,gmm,fcl,gmd,wcaF,wcaE,wcaD,wcaC,wcaB,wcaA,wzc,wzb,wza |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2101396 | 0 (0.000) | 32 (1.070) | 27/96 | 0.0 | 100% | pseudogene (349/349 nt) | wbbL | interrupted rhamnosyltransferase WbbL |
| ? | NC_000913 | 2137718 = | 0 (0.000) | intergenic (‑475/‑184) | wza/yegH | outer membrane polysaccharide export protein Wza/inner membrane protein YegH | |||||
TCAATATGGTTTTTAGGAGTTTCTTTAGGTTGACAATATTTAATATAGTGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTT > NC_000913/2137669‑2137765 | attaaagtataaatagcttatccatgcttatatgcttacggctttatatg > 1:1708622‑M2/50‑50 (MQ=255)attaaagtataaatagcttatccatgcttatatgcttacggctttatatg > 1:1731614‑M2/50‑50 (MQ=255) taaagtataaatagcttatccatgcttatatgcttacggctttatatGtc > 1:1603986‑M2/48‑50 (MQ=255) agtataaatagcttatccatgcttatatgcttacggctttatatGtctc > 1:1350215‑M2/45‑49 (MQ=255) tataaatagcttatccatgcttatatgcttacggctttatatGTCTTca > 1:2298993‑M2/43‑49 (MQ=255) tataaatagcttatccatgcttatatgcttacggctttatatGTCTCcac < 1:2115989‑M2/8‑1 (MQ=255) ataaatagcttatccatgcttatatgcttacggctttatatGTCTCcaca > 1:2427921‑M2/42‑50 (MQ=255) taaatagcttatccatgcttatatgcttacggctttatatGTCTCCACAt < 1:876300‑M2/10‑1 (MQ=255) aatagcttatccatgcttatatgcttacggctttatatGTCTCCACATg < 1:605038‑M2/11‑1 (MQ=255) atagcttatccatgcttatatgcttacggctttatatGTCTCCACATGc > 1:1230130‑M2/38‑49 (MQ=255) tatccatgcttatatgcttacggctttatatGTCTCCACATGCGATAttt > 1:348678‑M2/32‑50 (MQ=255) atccatgcttatatgcttacggctttatatGTCTCCACATGCGATAtt < 1:1771537‑M2/18‑1 (MQ=255) tccatgcttatatgcttacggctttatatGTCTCCACATGCGATATTTCt < 1:2154333‑M2/21‑1 (MQ=255) atgcttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTaa < 1:961359‑M2/24‑1 (MQ=255) gcttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTaaa > 1:852799‑M2/25‑49 (MQ=255) gcttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTaaa > 1:816894‑M2/25‑49 (MQ=255) cttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTAaata < 1:2067857‑M2/27‑1 (MQ=255) cttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTAaat < 1:749222‑M2/26‑1 (MQ=255) cttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTAaat < 1:1455089‑M2/26‑1 (MQ=255) tatatgcttacggctttatatGTCTCCACATGCGATATTTCTTAaataat > 1:2402617‑M2/22‑50 (MQ=255) tatgcttacggctttatatGTCTCCACATGCGATATTTCTTAAATAATg < 1:2153172‑M2/30‑1 (MQ=255) tgcttacggctttatatGTCTCCACATGCGATATTTCTTAAATAATGtt < 1:1399269‑M2/32‑1 (MQ=255) gcttacggctttatatGTCTCCACATGCGATATTTCTTAAATAATGttt > 1:2250774‑M2/17‑49 (MQ=255) cttacggctttatatGTCTCCACATGCGATATTTCTTAAATAATGtttt < 1:340685‑M2/34‑1 (MQ=255) cttacggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTtta < 1:2632818‑M2/35‑1 (MQ=255) acggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttatt < 1:432935‑M2/37‑1 (MQ=255) acggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttatt < 1:52991‑M2/37‑1 (MQ=255) acggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttatt < 1:108597‑M2/37‑1 (MQ=255) cggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttattat > 1:1926375‑M2/12‑50 (MQ=255) ggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttattatt < 1:2009963‑M2/40‑1 (MQ=255) ggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttattat > 1:1671341‑M2/11‑49 (MQ=255) atGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACttt > 1:1125123‑M2/3‑50 (MQ=255) | TCAATATGGTTTTTAGGAGTTTCTTTAGGTTGACAATATTTAATATAGTGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTT > NC_000913/2137669‑2137765 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |