Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,601,201	Δ13,595 bp		[hyfA]–focB	[hyfA], hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2601201	2614795	13595	39 [0]	[0] 37	[hyfA]–focB	[hyfA],hyfB,hyfC,hyfD,hyfE,hyfF,hyfG,hyfH,hyfI,hyfJ,hyfR,focB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2601200	0 (0.000)	37 (1.220)	30/98	0.0	100%	intergenic (+252/‑1)	bcp/hyfA	thiol peroxidase/hydrogenase 4 component A
	?	NC_000913	2614796 =	0 (0.000)					intergenic (+14/+24)	focB/yfgO	putative formate transporter/putative transporter YfgO

TTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2601153‑2601200 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAT  >  NC_000913/2614796‑2614842                                                                                                 TTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACC                                                >  1:1511350/1‑49    TGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAA                                            >  1:276024/1‑50    TGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAA                                            >  1:773543/1‑50    TGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAA                                             <  1:244345/49‑1        ATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGT                                        >  1:915090/1‑50        ATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGT                                        >  1:2028163/1‑50        ATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGT                                        >  1:172596/1‑50         TATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTT                                       <  1:528470/50‑1          ATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTC                                      >  1:1265728/1‑50           TGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCG                                     >  1:1522985/1‑50             AAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTC                                   <  1:2447302/50‑1             AAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTC                                   >  1:556824/1‑50                 GCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGC                               >  1:1478154/1‑50                  CAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCT                              >  1:1270204/1‑50                   AATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTG                             <  1:620399/50‑1                   AATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTG                             <  1:334548/50‑1                      GTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTG                             >  1:789193/1‑47                       TTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAG                          <  1:2624186/49‑1                        TTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGAT                        >  1:793432/1‑50                         TCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGAT                        >  1:2318629/1‑49                         TCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGAT                        <  1:1667147/49‑1                          CATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTA                      >  1:2230034/1‑50                          CATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTA                      >  1:203557/1‑50                          CATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTA                      >  1:109079/1‑50                           ATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTAT                     >  1:1088880/1‑50                           ATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTAT                     <  1:1412824/50‑1                           ATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTA                      <  1:2228401/49‑1                             ATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTC                   >  1:1732814/1‑50                             ATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTC                   >  1:1055361/1‑50                              TCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCT                  >  1:996895/1‑50                               CATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCTT                 >  1:2011730/1‑50                                 TTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGC               <  1:2007116/50‑1                                   TTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGC             >  1:425735/1‑50                                   TTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCG              <  1:1869883/49‑1                                    TCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGC             <  1:2461392/49‑1                                       AGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATT         >  1:582293/1‑50                                              GACCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAT  <  1:228983/50‑1                                                                                                 TTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2601153‑2601200 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAT  >  NC_000913/2614796‑2614842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.