| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,601,201 | Δ13,595 bp | [hyfA]–focB | [hyfA], hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2601201 | 2614795 | 13595 | 39 [0] | [0] 37 | [hyfA]–focB | [hyfA],hyfB,hyfC,hyfD,hyfE,hyfF,hyfG,hyfH,hyfI,hyfJ,hyfR,focB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2601200 | 0 (0.000) | 37 (1.220) | 30/98 | 0.0 | 100% | intergenic (+252/‑1) | bcp/hyfA | thiol peroxidase/hydrogenase 4 component A |
| ? | NC_000913 | 2614796 = | 0 (0.000) | intergenic (+14/+24) | focB/yfgO | putative formate transporter/putative transporter YfgO | |||||
GTTATCGGGCTATTTATTTACGTCAGGAACCCTGAAAAATCAGCCCGGCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAT > NC_000913/2614748‑2614842 | ttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc > 1:1511350‑M2/49‑49 (MQ=255) tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa > 1:276024‑M2/46‑50 (MQ=255) tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa > 1:773543‑M2/46‑50 (MQ=255) tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaa < 1:244345‑M2/4‑1 (MQ=255) atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt > 1:915090‑M2/42‑50 (MQ=255) atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt > 1:2028163‑M2/42‑50 (MQ=255) atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt > 1:172596‑M2/42‑50 (MQ=255) tatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGtt < 1:528470‑M2/10‑1 (MQ=255) atgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc > 1:1265728‑M2/40‑50 (MQ=255) tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcg > 1:1522985‑M2/39‑50 (MQ=255) aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc < 1:2447302‑M2/14‑1 (MQ=255) aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc > 1:556824‑M2/37‑50 (MQ=255) gcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGc > 1:1478154‑M2/33‑50 (MQ=255) caatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt > 1:1270204‑M2/32‑50 (MQ=255) aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg < 1:620399‑M2/20‑1 (MQ=255) aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg < 1:334548‑M2/20‑1 (MQ=255) gtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg > 1:789193‑M2/28‑47 (MQ=255) tttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAg < 1:2624186‑M2/23‑1 (MQ=255) ttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat > 1:793432‑M2/26‑50 (MQ=255) tcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat > 1:2318629‑M2/25‑49 (MQ=255) tcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat < 1:1667147‑M2/25‑1 (MQ=255) catatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatta > 1:2230034‑M2/24‑50 (MQ=255) catatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatta > 1:203557‑M2/24‑50 (MQ=255) catatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatta > 1:109079‑M2/24‑50 (MQ=255) atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat > 1:1088880‑M2/23‑50 (MQ=255) atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat < 1:1412824‑M2/28‑1 (MQ=255) atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatta < 1:2228401‑M2/27‑1 (MQ=255) atcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTc > 1:1732814‑M2/21‑50 (MQ=255) atcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTc > 1:1055361‑M2/21‑50 (MQ=255) tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCt > 1:996895‑M2/20‑50 (MQ=255) cattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCtt > 1:2011730‑M2/19‑50 (MQ=255) ttttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgc < 1:2007116‑M2/34‑1 (MQ=255) ttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc > 1:425735‑M2/15‑50 (MQ=255) ttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcg < 1:1869883‑M2/35‑1 (MQ=255) tcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc < 1:2461392‑M2/36‑1 (MQ=255) aggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAtt > 1:582293‑M2/11‑50 (MQ=255) gacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAt < 1:228983‑M2/47‑1 (MQ=255) | GTTATCGGGCTATTTATTTACGTCAGGAACCCTGAAAAATCAGCCCGGCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAT > NC_000913/2614748‑2614842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |