| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 389,898 | Δ9,908 bp | yaiT–[yaiZ] | yaiT, insF‑2, insE‑2, yaiT, iprA, ampH, sbmA, yaiW, yaiY, [yaiZ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 389898 | 399805 | 9908 | 48 [0] | [0] 51 | yaiT–[yaiZ] | yaiT,insF‑2,insE‑2,yaiT,iprA,ampH,sbmA,yaiW,yaiY,[yaiZ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 389897 | 0 (0.000) | 48 (1.580) | 42/98 | 0.0 | 100% | intergenic (‑170/‑354) | hemB/yaiT | porphobilinogen synthase/putative autotransporter YaiT |
| ? | NC_000913 | 399806 = | 0 (0.000) | intergenic (+1/+23) | yaiZ/ddlA | DUF2754 domain‑containing protein YaiZ/D‑alanine‑‑D‑alanine ligase A | |||||
AATAGAAACAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGC > NC_000913/389850‑389943 | aaTAGAAACAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTg < 1:499936‑M1/49‑2 (MQ=255) aTAGAAACAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTgaa > 1:2106533‑M1/1‑47 (MQ=255) aTAGAAACAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTga < 1:2063767‑M1/49‑3 (MQ=255) aTAGAAACAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTga < 1:2255480‑M1/49‑3 (MQ=255) aTAGAAACAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTga < 1:2607889‑M1/49‑3 (MQ=255) tAGAAACAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTgaa > 1:305744‑M1/1‑46 (MQ=255) aGAAACAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTgaata > 1:1184467‑M1/1‑45 (MQ=255) gAAACAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTgaata < 1:2644294‑M1/49‑6 (MQ=255) aaaCAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTgaatatt < 1:850569‑M1/50‑8 (MQ=255) aaaCAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTgaatatt < 1:746279‑M1/50‑8 (MQ=255) aaCAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTgaatatta > 1:427265‑M1/1‑42 (MQ=255) aGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTgaatattatcg < 1:2439819‑M1/50‑12 (MQ=255) aGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTgaatattatcg < 1:366025‑M1/50‑12 (MQ=255) aGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTgaatattatcg > 1:2211946‑M1/1‑39 (MQ=255) gCAATAATTTTATATTCACTGAAAATATTTTTAATCTTgaatattatcgg > 1:2036241‑M1/1‑38 (MQ=255) aataatTTTATATTCACTGAAAATATTTTTAATCTTgaatattatcgggc < 1:538114‑M1/50‑15 (MQ=255) ataatTTTATATTCACTGAAAATATTTTTAATCTTgaatattatcgggcg > 1:270801‑M1/1‑35 (MQ=255) ataatTTTATATTCACTGAAAATATTTTTAATCTTgaatattatcgggcg > 1:543475‑M1/1‑35 (MQ=255) ataatTTTATATTCACTGAAAATATTTTTAATCTTgaatattatcgggcg < 1:942825‑M1/50‑16 (MQ=255) atTTTATATTCACTGAAAATATTTTTAATCTTgaatattatcgggcgtta < 1:379925‑M1/50‑19 (MQ=255) ttttATATTCACTGAAAATATTTTTAATCTTgaatattatcgggcgtta > 1:2539647‑M1/1‑31 (MQ=255) tttATATTCACTGAAAATATTTTTAATCTTgaatattatcgggcgttaa > 1:888088‑M1/1‑30 (MQ=255) ttATATTCACTGAAAATATTTTTAATCTTgaatattgtcgggcgttaaaa > 1:1044471‑M1/1‑29 (MQ=255) ttATATTCACTGAAAATATTTTTAATCTTgaatattatcgggcgttaaa < 1:684352‑M1/49‑21 (MQ=255) atatTCACTGAAAATATTTTTAATCTTgaatattatcgggcgttaaaata > 1:1279329‑M1/1‑27 (MQ=255) atatTCACTGAAAATATTTTTAATCTTgaatattatcgggcgttaaaat < 1:582494‑M1/49‑23 (MQ=255) tatTCACTGAAAATATTTTTAATCTTgaatattatcgggcgttaaaatat > 1:520838‑M1/1‑26 (MQ=255) ttCACTGAAAATATTTTTAATCTTgaatattatcgggcgttaaaatatt < 1:1538132‑M1/49‑26 (MQ=255) tCACTGAAAATATTTTTAATCTTgaatattatcgggcgttaaaatatta > 1:2558072‑M1/1‑23 (MQ=255) aCTGAAAATATTTTTAATCTTgaatattatcgggcgttaaaatattacat > 1:1597887‑M1/1‑21 (MQ=255) gAAAATATTTTTAATCTTgaatattatcgggcgttaaaatattacattgt > 1:1353864‑M1/1‑18 (MQ=255) aaaaTATTTTTAATCTTgaatattatcgggcgttaaaatattacattgtg > 1:1179766‑M1/1‑17 (MQ=255) atatTTTTAATCTTgaatattatcgggcgttaaaatattacattgtggtt > 1:854411‑M1/1‑14 (MQ=255) atatTTTTAATCTTgaatattatcgggcgttaaaatattacattgtggtt < 1:1064033‑M1/50‑37 (MQ=255) tatTTTTAATCTTgaatattatcgggcgttaaaatattacattgtggttt < 1:2303259‑M1/50‑38 (MQ=255) atTTTTAATCTTgaatattatcgggcgttaaaatattacattgtggtttt > 1:1101872‑M1/1‑12 (MQ=255) tttttAATCTTgaatattatcgggcgttaaaatattacattgtggttttc < 1:1647042‑M1/50‑40 (MQ=255) tttttAATCTTgaatattatcgggcgttaaaatattacattgtggtttt > 1:964065‑M1/1‑11 (MQ=255) tttttAATCTTgaatattatcgggcgttaaaatattacattgtggtttt < 1:1650184‑M1/49‑39 (MQ=255) tttAATCTTgaatattatcgggcgttaaaatattacattgtggttttcaa > 1:734475‑M1/1‑9 (MQ=255) tttAATCTTgaatattatcgggcgttaaaatattacattgtggttttca < 1:654456‑M1/49‑41 (MQ=255) ttAATCTTgaatattatcgggcgttaaaatattacattgtggttttcaa < 1:2456554‑M1/49‑42 (MQ=255) tAATCTTgaatattatcgggcgttaaaatattacattgtggttttcaat < 1:1493844‑M1/49‑43 (MQ=255) tAATCTTgaatattatcgggcgttaaaatattacattgtggttttcaat < 1:1061396‑M1/49‑43 (MQ=255) aaTCTTgaatattatcgggcgttaaaatattacattgtggttttcaatgc > 1:2622717‑M1/1‑6 (MQ=255) aTCTTgaatattatcgggcgttaaaatattacattgtggttttcaatgcg < 1:2137610‑M1/50‑46 (MQ=255) tCTTgaatattatcgggcgttaaaatattacattgtggttttcaatgcgt > 1:2050696‑M1/1‑4 (MQ=255) cTTgaatattatcgggcgttaaaatattacattgtggttttcaatgcgt > 1:2268651‑M1/1‑3 (MQ=255) | AATAGAAACAGCAATAATTTTATATTCACTGAAAATATTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGC > NC_000913/389850‑389943 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |