| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 24 [0] | [0] 24 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 23 (0.860) | 20/96 | 0.1 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388840‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGA > NC_000913/1398623‑1398669 ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT < 1:1400804/49‑1 GTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:2325116/1‑48 TCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAG < 1:2104027/50‑1 ACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGG > 1:1263894/1‑50 CCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCT > 1:2164304/1‑50 GTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCT > 1:1616696/1‑49 GTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCC < 1:918453/48‑1 GTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCC < 1:233766/48‑1 TATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTAC < 1:1751599/49‑1 ACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACT < 1:1480629/49‑1 CAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAAC > 1:269885/1‑50 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG < 1:2059291/50‑1 ATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGC < 1:168591/50‑1 TAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCA < 1:1522789/50‑1 AACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAG > 1:1525526/1‑50 CACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTT > 1:734489/1‑50 CACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTT < 1:76007/50‑1 AGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTG > 1:2262319/1‑49 CAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAA < 1:2344842/50‑1 ATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA > 1:470518/1‑46 TTACAGGGTCTCCTTGCAACAACTGTCAACGCAGTTTGTAATTAAAAGA < 1:487769/49‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAG < 1:2052753/48‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAG < 1:289608/48‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAG < 1:714460/48‑1 ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388840‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGA > NC_000913/1398623‑1398669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |