| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 24 [0] | [0] 24 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 23 (0.860) | 20/96 | 0.1 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
TCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATACATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATT > NC_000913/1398576‑1398671 | gtcacacctagtttatgctaactgtcaataacacagcaaacgctatta > 1:2325116‑M2/48‑48 (MQ=255) tcacacctagtttatgctaactgtcaataacacagcaaacgctattACAg < 1:2104027‑M2/4‑1 (MQ=255) acacctagtttatgctaactgtcaataacacagcaaacgctattACAggg > 1:1263894‑M2/45‑50 (MQ=255) cctagtttatgctaactgtcaataacacagcaaacgctattACAGGGtct > 1:2164304‑M2/42‑50 (MQ=255) gtttatgctaactgtcaataacacagcaaacgctattACAGGGTCTcc < 1:918453‑M2/11‑1 (MQ=255) gtttatgctaactgtcaataacacagcaaacgctattACAGGGTCTcc < 1:233766‑M2/11‑1 (MQ=255) gtttatgctaactgtcaataacacagcaaacgctattACAGGGTCTCCt > 1:1616696‑M2/38‑49 (MQ=255) tatgctaactgtcaataacacagcaaacgctattACAGGGTCTCCTTac < 1:1751599‑M2/15‑1 (MQ=255) actgtcaataacacagcaaacgctattACAGGGTCTCCTTACAACAACt < 1:1480629‑M2/22‑1 (MQ=255) caataacacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAAc > 1:269885‑M2/23‑50 (MQ=255) aataacacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACg < 1:2059291‑M2/29‑1 (MQ=255) ataacacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGc < 1:168591‑M2/30‑1 (MQ=255) taacacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGCa < 1:1522789‑M2/31‑1 (MQ=255) aacacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGCAg > 1:1525526‑M2/19‑50 (MQ=255) cacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGCAGtt > 1:734489‑M2/17‑50 (MQ=255) cacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGCAGtt < 1:76007‑M2/34‑1 (MQ=255) agcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTg > 1:2262319‑M2/14‑49 (MQ=255) caaacgctattACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTaa < 1:2344842‑M2/39‑1 (MQ=255) attACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTaa > 1:470518‑M2/4‑46 (MQ=255) ttACAGGGTCTCCTTGCAACAACTGTCAACGCAGTTTGTAATTAAAAGa < 1:487769‑M2/47‑1 (MQ=255) ttACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAg < 1:289608‑M2/46‑1 (MQ=255) ttACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAg < 1:714460‑M2/46‑1 (MQ=255) ttACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAg < 1:2052753‑M2/46‑1 (MQ=255) aCAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAtt > 1:520013/1‑49 (MQ=255) | TCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATACATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATT > NC_000913/1398576‑1398671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |