Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,101,397 Δ36,321 bp [wbbL]–wza 34 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2101397 2137717 36321 34 [0] [0] 34 [wbbL]–wza [wbbL],insH‑7,wbbL,wbbK,wbbJ,wbbI,wbbH,glf,rfbX,rfbC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ,cpsG,cpsB,wcaI,gmm,fcl,gmd,wcaF,wcaE,wcaD,wcaC,wcaB,wcaA,wzc,wzb,wza

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 21013960 (0.000)34 (1.270) 29/96 0.0 100% pseudogene (349/349 nt) wbbL interrupted rhamnosyltransferase WbbL
?NC_000913 2137718 = 0 (0.000)intergenic (‑475/‑184) wza/yegH outer membrane polysaccharide export protein Wza/inner membrane protein YegH

ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2101348‑2101396
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCAC  >  NC_000913/2137718‑2137762
                                                                                              
ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATG                                              >  1:1001627/1‑50
    AAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCT                                           <  1:2251556/49‑1
    AAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCT                                           <  1:746497/49‑1
      GTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCA                                        <  1:2206933/50‑1
       TATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCA                                        >  1:1908405/1‑49
            ATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCG                                  <  1:803404/50‑1
               GCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATA                               <  1:1773578/50‑1
                 TTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATT                             >  1:811793/1‑50
                  TATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTT                            >  1:701594/1‑50
                   ATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATT                             <  1:2175830/48‑1
                     CCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCT                          >  1:1399230/1‑49
                      CATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTT                         >  1:1024163/1‑49
                       ATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTA                        >  1:697542/1‑49
                         GCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAA                      >  1:173521/1‑49
                         GCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAA                      >  1:1712532/1‑49
                          CTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATA                    <  1:1399773/50‑1
                          CTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAAT                     >  1:738096/1‑49
                           TTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAA                   >  1:246704/1‑50
                                TGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTT              <  1:96138/50‑1
                                TGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTT              >  1:351228/1‑50
                                TGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTT               <  1:658794/49‑1
                                  CTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTT             <  1:255595/49‑1
                                    TACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTAT           >  1:1922980/1‑49
                                    TACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTAT           >  1:986170/1‑49
                                     ACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTA         >  1:627727/1‑50
                                     ACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTAT           <  1:868009/48‑1
                                      CGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTAT        >  1:245249/1‑50
                                      CGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTAT        <  1:1379675/50‑1
                                      CGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTA         <  1:26075/49‑1
                                      CGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTA         <  1:868637/49‑1
                                      CGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTA         <  1:975299/49‑1
                                       GGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTAT        >  1:1844864/1‑49
                                         CTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTAC     <  1:48313/50‑1
                                             ATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCAC  <  1:1359264/49‑1
                                                                                              
ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2101348‑2101396
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCAC  >  NC_000913/2137718‑2137762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.