| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,101,397 | Δ36,321 bp | [wbbL]–wza | 34 genes [wbbL], insH‑7, wbbL, wbbK, wbbJ, wbbI, wbbH, glf, rfbX, rfbC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ, cpsG, cpsB, wcaI, gmm, fcl, gmd, wcaF, wcaE, wcaD, wcaC, wcaB, wcaA, wzc, wzb, wza |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2101397 | 2137717 | 36321 | 34 [0] | [0] 34 | [wbbL]–wza | [wbbL],insH‑7,wbbL,wbbK,wbbJ,wbbI,wbbH,glf,rfbX,rfbC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ,cpsG,cpsB,wcaI,gmm,fcl,gmd,wcaF,wcaE,wcaD,wcaC,wcaB,wcaA,wzc,wzb,wza |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2101396 | 0 (0.000) | 34 (1.270) | 29/96 | 0.0 | 100% | pseudogene (349/349 nt) | wbbL | interrupted rhamnosyltransferase WbbL |
| ? | NC_000913 | 2137718 = | 0 (0.000) | intergenic (‑475/‑184) | wza/yegH | outer membrane polysaccharide export protein Wza/inner membrane protein YegH | |||||
TCAATATGGTTTTTAGGAGTTTCTTTAGGTTGACAATATTTAATATAGTGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCAC > NC_000913/2137669‑2137762 | attaaagtataaatagcttatccatgcttatatgcttacggctttatatg > 1:1001627‑M2/50‑50 (MQ=255) aagtataaatagcttatccatgcttatatgcttacggctttatatGtct < 1:2251556‑M2/4‑1 (MQ=255) aagtataaatagcttatccatgcttatatgcttacggctttatatGtct < 1:746497‑M2/4‑1 (MQ=255) gtataaatagcttatccatgcttatatgcttacggctttatatGTCTCca < 1:2206933‑M2/7‑1 (MQ=255) tataaatagcttatccatgcttatatgcttacggctttatatGTCTCca > 1:1908405‑M2/43‑49 (MQ=255) atagcttatccatgcttatatgcttacggctttatatGTCTCCACATGCg < 1:803404‑M2/13‑1 (MQ=255) gcttatccatgcttatatgcttacggctttatatGTCTCCACATGCGata < 1:1773578‑M2/16‑1 (MQ=255) ttatccatgcttatatgcttacggctttatatGTCTCCACATGCGATAtt > 1:811793‑M2/33‑50 (MQ=255) tatccatgcttatatgcttacggctttatatGTCTCCACATGCGATAttt > 1:701594‑M2/32‑50 (MQ=255) atccatgcttatatgcttacggctttatatGTCTCCACATGCGATAtt < 1:2175830‑M2/18‑1 (MQ=255) ccatgcttatatgcttacggctttatatGTCTCCACATGCGATATTTCt > 1:1399230‑M2/29‑49 (MQ=255) catgcttatatgcttacggctttatatGTCTCCACATGCGATATTTCtt > 1:1024163‑M2/28‑49 (MQ=255) atgcttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTa > 1:697542‑M2/27‑49 (MQ=255) gcttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTaaa > 1:173521‑M2/25‑49 (MQ=255) gcttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTaaa > 1:1712532‑M2/25‑49 (MQ=255) cttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTAaata < 1:1399773‑M2/27‑1 (MQ=255) cttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTAaat > 1:738096‑M2/24‑49 (MQ=255) ttatatgcttacggctttatatGTCTCCACATGCGATATTTCTTAaataa > 1:246704‑M2/23‑50 (MQ=255) tgcttacggctttatatGTCTCCACATGCGATATTTCTTAAATAATGttt < 1:96138‑M2/33‑1 (MQ=255) tgcttacggctttatatGTCTCCACATGCGATATTTCTTAAATAATGttt > 1:351228‑M2/18‑50 (MQ=255) tgcttacggctttatatGTCTCCACATGCGATATTTCTTAAATAATGtt < 1:658794‑M2/32‑1 (MQ=255) cttacggctttatatGTCTCCACATGCGATATTTCTTAAATAATGtttt < 1:255595‑M2/34‑1 (MQ=255) tacggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttat > 1:1922980‑M2/14‑49 (MQ=255) tacggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttat > 1:986170‑M2/14‑49 (MQ=255) acggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttatta > 1:627727‑M2/13‑50 (MQ=255) acggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttat < 1:868009‑M2/36‑1 (MQ=255) cggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttattat > 1:245249‑M2/12‑50 (MQ=255) cggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttattat < 1:1379675‑M2/39‑1 (MQ=255) cggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttatta < 1:26075‑M2/38‑1 (MQ=255) cggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttatta < 1:868637‑M2/38‑1 (MQ=255) cggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttatta < 1:975299‑M2/38‑1 (MQ=255) ggctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTttattat > 1:1844864‑M2/11‑49 (MQ=255) ctttatatGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTAc < 1:48313‑M2/42‑1 (MQ=255) atatGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCAc < 1:1359264‑M2/45‑1 (MQ=255) | TCAATATGGTTTTTAGGAGTTTCTTTAGGTTGACAATATTTAATATAGTGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCAC > NC_000913/2137669‑2137762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |