| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,101,397 | Δ36,321 bp | [wbbL]–wza | 34 genes [wbbL], insH‑7, wbbL, wbbK, wbbJ, wbbI, wbbH, glf, rfbX, rfbC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ, cpsG, cpsB, wcaI, gmm, fcl, gmd, wcaF, wcaE, wcaD, wcaC, wcaB, wcaA, wzc, wzb, wza |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2101397 | 2137717 | 36321 | 34 [0] | [0] 34 | [wbbL]–wza | [wbbL],insH‑7,wbbL,wbbK,wbbJ,wbbI,wbbH,glf,rfbX,rfbC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ,cpsG,cpsB,wcaI,gmm,fcl,gmd,wcaF,wcaE,wcaD,wcaC,wcaB,wcaA,wzc,wzb,wza |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2101396 | 0 (0.000) | 34 (1.270) | 29/96 | 0.0 | 100% | pseudogene (349/349 nt) | wbbL | interrupted rhamnosyltransferase WbbL |
| ? | NC_000913 | 2137718 = | 0 (0.000) | intergenic (‑475/‑184) | wza/yegH | outer membrane polysaccharide export protein Wza/inner membrane protein YegH | |||||
ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATTACGGGTGAAAAACTGATGAAATTCGATCAAAGTTGCGATTTGAT > NC_000913/2101348‑2101441 | attaAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATg > 1:1001627‑M1/1‑49 (MQ=255) aaGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATgtct < 1:2251556‑M1/49‑5 (MQ=255) aaGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATgtct < 1:746497‑M1/49‑5 (MQ=255) gTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATgtctcca < 1:2206933‑M1/50‑8 (MQ=255) tataAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATgtctcca > 1:1908405‑M1/1‑42 (MQ=255) aTAGCTTATCCATGCTTATATGCTTACGGCTTTATATgtctccacatgcg < 1:803404‑M1/50‑14 (MQ=255) gCTTATCCATGCTTATATGCTTACGGCTTTATATgtctccacatgcgata < 1:1773578‑M1/50‑17 (MQ=255) ttATCCATGCTTATATGCTTACGGCTTTATATgtctccacatgcgatatt > 1:811793‑M1/1‑32 (MQ=255) tATCCATGCTTATATGCTTACGGCTTTATATgtctccacatgcgatattt > 1:701594‑M1/1‑31 (MQ=255) aTCCATGCTTATATGCTTACGGCTTTATATgtctccacatgcgatatt < 1:2175830‑M1/48‑19 (MQ=255) ccATGCTTATATGCTTACGGCTTTATATgtctccacatgcgatatttct > 1:1399230‑M1/1‑28 (MQ=255) cATGCTTATATGCTTACGGCTTTATATgtctccacatgcgatatttctt > 1:1024163‑M1/1‑27 (MQ=255) aTGCTTATATGCTTACGGCTTTATATgtctccacatgcgatatttctta > 1:697542‑M1/1‑26 (MQ=255) gCTTATATGCTTACGGCTTTATATgtctccacatgcgatatttcttaaa > 1:173521‑M1/1‑24 (MQ=255) gCTTATATGCTTACGGCTTTATATgtctccacatgcgatatttcttaaa > 1:1712532‑M1/1‑24 (MQ=255) cTTATATGCTTACGGCTTTATATgtctccacatgcgatatttcttaaata < 1:1399773‑M1/50‑28 (MQ=255) cTTATATGCTTACGGCTTTATATgtctccacatgcgatatttcttaaat > 1:738096‑M1/1‑23 (MQ=255) ttATATGCTTACGGCTTTATATgtctccacatgcgatatttcttaaataa > 1:246704‑M1/1‑22 (MQ=255) tGCTTACGGCTTTATATgtctccacatgcgatatttcttaaataatgttt < 1:96138‑M1/50‑34 (MQ=255) tGCTTACGGCTTTATATgtctccacatgcgatatttcttaaataatgttt > 1:351228‑M1/1‑17 (MQ=255) tGCTTACGGCTTTATATgtctccacatgcgatatttcttaaataatgtt < 1:658794‑M1/49‑33 (MQ=255) cTTACGGCTTTATATgtctccacatgcgatatttcttaaataatgtttt < 1:255595‑M1/49‑35 (MQ=255) tACGGCTTTATATgtctccacatgcgatatttcttaaataatgttttat > 1:1922980‑M1/1‑13 (MQ=255) tACGGCTTTATATgtctccacatgcgatatttcttaaataatgttttat > 1:986170‑M1/1‑13 (MQ=255) aCGGCTTTATATgtctccacatgcgatatttcttaaataatgttttatta > 1:627727‑M1/1‑12 (MQ=255) aCGGCTTTATATgtctccacatgcgatatttcttaaataatgttttat < 1:868009‑M1/48‑37 (MQ=255) cGGCTTTATATgtctccacatgcgatatttcttaaataatgttttattat > 1:245249‑M1/1‑11 (MQ=255) cGGCTTTATATgtctccacatgcgatatttcttaaataatgttttattat < 1:1379675‑M1/50‑40 (MQ=255) cGGCTTTATATgtctccacatgcgatatttcttaaataatgttttatta < 1:26075‑M1/49‑39 (MQ=255) cGGCTTTATATgtctccacatgcgatatttcttaaataatgttttatta < 1:868637‑M1/49‑39 (MQ=255) cGGCTTTATATgtctccacatgcgatatttcttaaataatgttttatta < 1:975299‑M1/49‑39 (MQ=255) ggCTTTATATgtctccacatgcgatatttcttaaataatgttttattat > 1:1844864‑M1/1‑10 (MQ=255) cTTTATATgtctccacatgcgatatttcttaaataatgttttattattac < 1:48313‑M1/50‑43 (MQ=255) atatgtctccacatgcgatatttcttaaataatgttttattattaccac < 1:1359264‑M1/49‑46 (MQ=255) | ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATTACGGGTGAAAAACTGATGAAATTCGATCAAAGTTGCGATTTGAT > NC_000913/2101348‑2101441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |