| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 27 [0] | [0] 27 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 27 (1.010) | 23/96 | 0.1 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320095‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > NC_000913/2336633‑2336677 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:1162845/1‑50 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 1:1801298/1‑49 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA > 1:1238886/1‑50 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA > 1:2185805/1‑50 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT < 1:622902/50‑1 TGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT > 1:2187992/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:1999062/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT < 1:1429113/48‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCAC < 1:640645/50‑1 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA > 1:396541/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT > 1:1760663/1‑50 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 1:1829262/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:913359/1‑49 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:1143931/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:183157/1‑49 CGCTTACTATTGGTTATATTTCACCACTCATTGCCAAATTCCTTGTGTAT < 1:1909645/50‑1 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:1969082/1‑50 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:2036934/1‑49 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:2186722/1‑48 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:716375/1‑48 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG > 1:2136529/1‑50 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC < 1:826000/48‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC < 1:940464/48‑1 TGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAT > 1:354591/1‑50 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAT < 1:1848886/49‑1 TATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:1194436/1‑50 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT < 1:1547840/49‑1 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320095‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > NC_000913/2336633‑2336677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |